Job Description P77348 Confidence 100.00% Date Thu Jan 5 12:28:03 GMT 2012 Rank 7 Aligned Residues 484 % Identity 19% Template d1xoca1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.55

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		L	A	E	K	Q	E	L	V	R	H	I	K	D	E	P	A	S	L	D	P	A	K	A	V	G	L	P	E	I	Q	V	I	R	D	L	F	E	G	L	V	N	Q	N	E	K	G	E	I	V	P	G	V	A	T	Q	W	K	.	S	N	D	N	R	I	W	T	F	T	L	R	D	N	A	K	W	A	D	G	T	P
Query Conservation																																																											.
Alig confidence																																																											.
Template Conservation
Template Sequence		P	Q	Q	G	G	D	L	V	V	G	S	I	G	E	P	T	L	F	N	S	L	Y	S	T	D	D	A	S	T	D	I	E	N	M	L	Y	S	F	L	T	K	T	D	E	K	L	N	V	K	L	S	L	A	E	S	I	K	E	L	D	G	G	L	A	Y	D	V	K	I	K	K	G	V	K	F	H	D	G	K	E
Template Known Secondary structure													S	S					S		T	T	T			S														S					T	T	S					S	S								G	G	G	T								S	S		B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	A	Q	D	F	V	Y	S	W	Q	R	L	V	D	P	K	T	L	S	P	F	A	W	F	A	A	L	A	G	I	N	N	A	Q	A	I	I	D	G	K	A	T	P	D	Q	L	G	V	T	A	V	D	A	H	T	L	K	I	Q	L	D	K	P	L	P	W	F	V	N	L	T	A	N	F	A	F	F	P	V
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	A	D	D	V	V	F	T	Y	S	V	P	L	S	K	D	Y	K	G	E	R	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	E	M	L	K	S	V	E	K	K	G	D	Y	E	V	L	F	K	L	K	Y	K	D	G	N	F	Y	N	N	A	L	D	S	T	A	I	L	P
Template Known Secondary structure													G	G	G	S	T	T				S		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	T									T	T							S	S			T					T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		190	.	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		Q	K	A	N	V	E	S	.	.	.	.	.	G	K	E	W	T	K	P	G	N	L	I	G	N	G	A	Y	V	L	K	E	R	V	V	N	E	K	L	V	V	V	P	N	T	H	Y	W	D	N	A	K	T	V	L	Q	K	V	T	F	L	P	I	N	Q	E	S	A	A	T	K	R	Y	L	A	G	D	I	D	I
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.																																					.
Template Conservation																																																		.
Template Sequence		K	H	I	L	G	N	V	P	I	A	D	L	E	E	N	E	F	N	R	K	K	P	I	G	S	G	P	F	K	F	K	E	W	K	Q	G	Q	Y	I	K	L	E	A	N	D	D	Y	F	.	E	G	R	P	Y	L	D	T	V	T	Y	K	V	I	P	D	A	N	A	A	E	A	Q	L	Q	A	G	D	I	N	F
Template Known Secondary structure						T	T	S		G	G	G	T	T	T	S	G	G	G	T	T					S	S	S								T	T	T								T	T		T	.	T				S	S	S								S												T	S			B
Template Predicted Secondary structure																																																		.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	S	F	P	K	N	M	Y	Q	K	L	L	K	D	I	P	G	Q	V	Y	T	P	P	Q	L	G	T	Y	Y	Y	A	F	N	T	Q	K	G	P	T	A	D	Q	R	V	R	L	A	L	S	M	T	I	D	R	R	L	M	T	E	K	V	L	G	T	G	E	K	P	A	W	H	F	T	P	D	V	T	A	G
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		F	.	N	V	P	A	T	D	Y	K	T	A	E	K	F	N	N	L	K	I	V	T	D	L	A	L	S	Y	V	Y	I	G	W	N	E	K	N	E	L	F	K	D	K	K	V	R	Q	A	L	T	T	A	L	D	R	E	S	I	V	S	Q	V	L	D	G	D	G	E	V	A	Y	I	P	E	S	P	L	S	W	N
Template Known Secondary structure			.				G	G	G					T	T	S	T	T									S									T	T	S	G	G	G												T											S	T	T		S					S	S	S		T	T	S	T	T
Template Predicted Secondary structure			.
Template SS confidence
		240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.
Query Sequence		F	T	P	E	P	S	P	F	E	Q	M	S	Q	E	E	L	N	A	Q	A	K	T	L	L	S	A	A	G	Y	.	.	.	.	.	.	.	.	.	.	G	P	Q	K	P	L	K	L	T	L	L	Y	N	T	S	E	N	H	Q	K	I	A	I	A	V	A	S	M	W	K	K	N	L	G	V	D	V	K	L	Q	N
Query Conservation																															.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.
Template Sequence		Y	P	K	D	I	D	V	P	K	.	.	.	F	E	Y	N	E	K	K	A	K	Q	M	L	A	E	A	G	W	K	D	T	N	G	D	G	I	L	D	K	D	G	K	K	F	S	F	T	L	K	T	N	Q	G	N	K	V	R	E	D	I	A	V	V	V	Q	E	Q	L	K	K	I	G	I	E	V	K	T	Q	I
Template Known Secondary structure		S		T	T						.	.	.															T	T		B		S	S	S	S	S	S				T	T											T	T																	T	T	T
Template Predicted Secondary structure											.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.			.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																.	.										.
Query SS confidence																.	.										.
Query Sequence		Q	E	W	K	T	Y	I	D	S	R	N	T	G	N	.	.	F	D	V	I	R	A	S	W	V	.	G	D	Y	N	E	P	S	T	F	L	T	L	L	T	S	T	H	S	G	N	I	S	R	F	N	N	P	A	Y	D	K	V	L	A	Q	A	S	T	E	N	T	V	K	A	R	N	A	D	Y	N	A	A	E	K
Query Conservation																.	.										.
Alig confidence																.	.										.
Template Conservation
Template Sequence		V	E	W	S	A	L	V	E	Q	M	N	P	P	N	W	D	F	D	A	M	V	M	G	W	S	L	S	T	F	P	D	Q	Y	D	I	F	H	S	S	Q	I	K	K	G	L	N	Y	V	W	Y	K	N	A	E	A	D	K	L	M	K	D	A	K	S	I	S	D	R	K	Q	Y	S	K	E	Y	E	Q	I	Y	Q
Template Known Secondary structure												S	T	T	T				S										S	S			T					S	G	G	G	T	T	T	S	S		T	T															T	T			S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	M	E	Q	A	P	I	A	P	I	Y	Q	Y	T	N	G	R	L	I	K	P	W	L	K	G	Y	P	I	N	N	P	E	D	V	A	Y	S	R	T	M	Y	I	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	A	E	D	Q	P	Y	T	F	L	Y	Y	P	N	N	H	M	A	M	P	E	N	L	E	G	Y	K	Y	H	P	K	R	D	L	Y	N	I	E	K	W	W	L	A	K
Template Known Secondary structure								S															T	T			S					S	S		T	T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520