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Job DescriptionP77348
Confidence100.00%DateThu Jan 5 12:28:03 GMT 2012
Rank17Aligned Residues459
% Identity21%Templatec3ry3B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis.
Resolution2.43 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40..... ....50.........60.........70.........80....... ..90.........100.........110...
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Query Sequence  ELVRHIKDEP. ASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWK. SNDNRIWTFTLRDNAKWADGTPVTAQ
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Template Sequence  TLQLAIGDEPTEGFDPXLGWSHGSYLL. . . LHSPLLKQNEDFSWDSLLLSQYQPSDDGKTWLLTLKPDLKFSDGSPLTAK
Template Known Secondary structure 

S


SS


GGG
SSSST...


S
TTS
SS
TTSS
TT
B
TTS
B

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   30.........40.........50...... ...60.........70.........80.........90.........100......
 
   114.....120.........130.........140.........150.........160.........170.........180.........190...
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Query Sequence  DFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPVQKAN
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Template Sequence  DVAFTYNNAAAGKVDXG. . . . . . . . . . . . . . . . . . . . . . . NFLSAEVIDPLNVRIHLKAPQSTFVNVLGSLGIVSAD. . .
Template Known Secondary structure  T


S

S.......................STTSS

TTTTS



ST...
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   107..110.........120... ......130.........140.........150.........160
 
   194.....200.........210.........220.........230.........240.........250.........260.........270...
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Query Sequence  VESGKEWTKPGNLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMY
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Template Sequence  . . KYNAKTYAQKPIGAGPYRLVSFQPGQQXIVEANPYYA. GNKNDFDKLIFVFL. DEDSAFAAAQSGQLGVVRIPPSXAV
Template Known Secondary structure  ..T

TTTTTTS


SSSTTT
TT
S.S


S
S

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S
TTS

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   163......170.........180.........190......... 200.........210... ......220.........230........
 
   274... ..280.........290.........300.........310.........320.........330.........340...
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Query Sequence  QKLL. . . . . . . . . . KDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTA
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Template Sequence  GSVNNXKLWVRPSVENRGIVFPTTPAGKKDAHGYPIGNDVTADVAIRRAINYAINRQLLADQIXEGHAIPAYTGVQGLPW
Template Known Secondary structure 


TT
B




S
S

TTS


TTTTS

STT

SSTTTTSTT
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   344.....350.........360.........370... ......380.........390.........400.........410....
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Query Sequence  GFTPEPSPFEQMSQEELNAQAKTLLSAAGY. . . . . . . . . GPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQN
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Template Sequence  NNPDSA. . . . . . IKDGDIDKAKQILEQAGWQLNSQGTREKNGLPAKITLWYTSGDTTRRDLAQALRSXLKPIGIDVDLKS
Template Known Secondary structure  S
TT

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S
TT

TTSSTT
SS
GGGT
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   319320.... .....330.........340.........350.........360.........370.........380.........390..
 
   415....420.........430.........440.... .....450.........460.........470.........480.........490
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Query Sequence  QEWKTYIDSRNTGNFDVIRASWVGDYNEPS. . TFLTLLTSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAE. .
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Template Sequence  GSWETVERN. . . XHANPTLFGWGSLDPXELYHHYSSNAAGVEYYNPGYYKNPXVDKHLQQALDAPTWQQAVPFWQQVDWD
Template Known Secondary structure 
...TTTS




SST
GGGTTSTTSSTT




SSTTT

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   393......400. ........410.........420.........430.........440.........450.........460.........
 
   491........500.........510........ .520.........530......
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Query Sequence  . . . . KILMEQAPIAPIYQYTNGRLIKPWLKGY. . PINNPEDVAYSRTMYIVK
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Template Sequence  GTTGAGIRGDAAWAWLLNIQHTYLANNCVDLGKGTPEIHGSWSLLNSIDSWK
Template Known Secondary structure  SS

SSTTTT


TT





S
B
SSTTGGGGGGGG

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   470.........480.........490.........500.........510.........520.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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