Job Description P77348 Confidence 100.00% Date Thu Jan 5 12:28:03 GMT 2012 Rank 11 Aligned Residues 466 % Identity 18% Template c3rqtA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines Resolution 1.50 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	E	L	V	R	H	I	K	D	E	P	A	S	L	D	P	A	K	A	V	G	L	P	E	I	Q	V	I	R	D	L	F	E	G	L	V	N	Q	N	E	K	G	E	I	V	P	G	V	A	T	Q	W	K	S	N	D	N	R	I	W	T	F	T	L	R	D	N	A	K	W	A	D	G	T	P	V	T	A	Q
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		G	K	D	L	N	I	S	L	P	L	K	T	K	S	I	A	P	Y	E	T	.	.	.	.	D	V	P	V	K	I	G	A	A	E	S	L	F	K	T	N	D	Q	G	K	I	E	K	A	L	V	K	S	Y	H	Q	P	N	D	T	T	L	D	I	E	L	K	D	N	I	K	F	Q	N	G	Q	K	L	T	A	E
Template Known Secondary structure										S	S			S				T	T	T		.	.	.	.	S					T	T	S		B		S					T	T	S					S	S									T	T								S	S		B		T	T	S		B
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	Y	S	W	Q	R	L	V	D	P	K	T	L	S	P	F	A	W	F	A	A	L	A	G	I	N	N	A	Q	A	I	I	D	G	K	A	T	P	D	Q	L	G	V	T	A	V	D	A	H	T	L	K	I	Q	L	D	K	P	L	P	W	F	V	N	L	T	A	N	F	A	F	F	P	V	Q	K	A	N
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	K	S	S	L	E	N	S	X	K	K	S	D	L	V	K	Y	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	S	S	I	T	A	K	G	Q	K	L	T	I	K	T	N	S	A	Y	P	E	L	V	S	E	L	A	N	P	F	X	A	I	Y	D	T	D	A
Template Known Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T							S	S			T	T					T	T	S	G	G	G		B			T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100																						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	S	G	K	E	W	T	K	P	G	N	L	I	G	N	G	A	Y	V	L	K	E	R	V	V	N	E	K	L	V	V	V	P	N	T	H	Y	W	D	N	A	K	T	V	L	Q	K	V	T	F	L	P	I	N	Q	E	S	A	A	T	K	R	Y	L	A	G	D	I	D	I	T	E	S	F	P	K	N	M	Y
Query Conservation
Alig confidence					.	.	.	.	.																																.
Template Conservation					.	.	.	.	.																																.
Template Sequence		K	S	D	.	.	.	.	.	V	N	Q	T	P	V	G	T	G	P	Y	Q	I	K	D	Y	K	Q	S	R	K	I	S	L	S	N	F	K	D	Y	W	.	Q	G	K	P	K	L	D	H	I	T	V	T	Y	Q	E	D	G	N	N	R	V	R	N	L	E	S	Q	K	D	D	L	I	T	D	V	P	V	N	K	V
Template Known Secondary structure		S	S		.	.	.	.	.	T	T	T	S				S	S	S								T	T	T								T	T		T	.	T	S			S		S																			T	T	S		S				S			G	G	G
Template Predicted Secondary structure					.	.	.	.	.																																.
Template SS confidence
		140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	L	K	D	I	P	G	Q	V	Y	T	P	P	Q	L	G	T	Y	Y	Y	A	F	N	T	Q	K	G	P	T	A	D	Q	R	V	R	L	A	L	S	M	T	I	D	R	R	L	M	T	E	K	V	L	G	T	G	E	K	P	A	W	H	F	T	P	D	V	T	A	G	F	T	P	E	P	S	P	F	E
Query Conservation
Alig confidence																														.																																																	.	.	.
Template Conservation																														.																																																	.	.	.
Template Sequence		Q	D	I	E	N	N	Q	N	L	K	V	S	K	E	S	G	F	R	T	S	L	L	X	Y	N	H	T	N	.	K	K	X	T	K	S	V	R	E	A	L	D	H	I	I	D	R	Q	G	I	A	D	H	I	Y	Q	G	Y	A	K	P	A	T	S	P	F	N	D	K	I	P	Y	I	K	E	P	K	L	.	.	.
Template Known Secondary structure								T	T																		T	T	S	.	T	T																						T	S	T	T	S					S	S	S	S		T	T	S	T	T							.	.	.
Template Predicted Secondary structure																														.																																																	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		Q	M	S	Q	E	E	L	N	A	Q	A	K	T	L	L	S	A	A	G	Y	G	P	Q	K	P	L	K	L	T	L	L	Y	N	T	S	E	N	H	Q	K	I	A	I	A	V	A	S	M	W	K	K	N	L	G	V	D	V	K	L	Q	N	Q	E	W	K	T	Y	I	D	S	.	R	N	T	G	N	F	D	V	I
Query Conservation																																																																								.
Alig confidence		.	.	.																																																																				.
Template Conservation		.	.	.
Template Sequence		.	.	.	T	K	Q	N	I	E	Q	A	K	X	L	L	A	K	D	G	Y	T	K	E	H	P	L	K	I	K	L	I	T	Y	D	G	R	P	E	L	S	K	I	A	Q	V	L	Q	S	D	A	K	K	A	N	I	E	I	D	I	K	S	V	D	D	I	E	G	Y	L	K	D	R	S	A	W	D	A	T	X	Y
Template Known Secondary structure		.	.	.														T	T	T			S	S	S										S	S	S	T															T	T	T									S						T	T		T	T	S		S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	S	W	V	G	D	Y	N	E	P	S	T	F	L	T	L	L	T	S	T	H	S	G	N	I	S	R	F	N	N	P	A	Y	D	K	V	L	A	Q	A	S	T	E	N	T	V	K	A	R	N	A	D	Y	N	A	A	E	K	I	L	M	E	Q	A	P	I	A	P	I	Y	Q	Y	T	N	G	R	L	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	G	T	I	P	R	G	D	T	G	Y	F	F	N	Q	A	Y	K	K	D	G	A	I	N	K	G	D	Y	N	N	S	N	V	D	D	L	I	N	Q	L	N	H	T	V	D	V	K	E	R	H	N	I	S	N	D	I	I	K	L	S	S	R	D	V	P	N	S	Y	I	A	Y	N	D	Q	I	V	A	A	N
Template Known Secondary structure					S		T	T	S		T								T	S	T	T		T	T		T	T																T																							S
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	W	L	K	G	Y	P	I	N	N	P	E	D	V	A	Y	S	R	T	M	Y	I	V	K	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	V	K	N	Y	K	V	T	P	E	G	I	Y	L	I	D	Y	R	T	T	I	E	H	H
Template Known Secondary structure		T	T								T	T	S						T	T
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.