Job Description P77348 Confidence 100.00% Date Thu Jan 5 12:28:03 GMT 2012 Rank 15 Aligned Residues 475 % Identity 16% Template c2grvC_ PDB info PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw Resolution 2.40 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.									.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																								.	.																						.	.	.	.	.	.	.	.												.	.
Query SS confidence																								.	.																						.	.	.	.	.	.	.	.												.	.
Query Sequence		K	Q	E	L	V	R	H	I	K	D	E	P	A	S	L	D	P	A	K	A	V	G	.	.	L	P	E	I	Q	V	I	R	D	L	F	E	G	L	V	N	Q	N	E	K	G	.	.	.	.	.	.	.	.	E	I	V	P	G	V	A	T	Q	W	K	.	.	S	N	D	N	R	I	W	T	F	T	L	R	D	N
Query Conservation																								.	.																						.	.	.	.	.	.	.	.												.	.
Alig confidence																								.	.																						.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		P	T	Q	I	I	M	A	I	D	S	I	G	P	G	F	N	P	H	L	L	S	D	Q	S	P	V	N	A	A	I	A	S	L	V	L	P	S	S	F	R	P	V	P	D	P	T	S	P	T	G	S	R	W	E	L	D	T	T	L	L	E	S	A	E	V	T	Q	E	N	P	F	T	V	T	Y	K	I	R	P	E
Template Known Secondary structure										S				S		S		T	T	B	G	G	G		S											S			S							T	T	S	T	T	S							T	T	T									T	T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		A	K	W	A	D	G	T	P	V	T	A	Q	D	F	V	Y	S	W	Q	R	L	V	D	P	K	T	L	S	P	F	A	W	F	A	A	L	A	G	I	N	N	A	Q	A	I	I	D	G	K	A	T	P	D	Q	L	G	V	T	A	V	.	D	A	H	T	L	K	I	Q	L	D	K	P	L	P	W	F	V	N	L
Query Conservation																																																														.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	W	T	D	N	A	P	I	A	A	D	D	Y	W	Y	L	W	R	Q	M	V	S	Q	P	G	V	V	D	P	A	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	I	T	G	V	Q	S	V	E	G	G	K	Q	A	V	V	T	F	S	Q	P	Y	P	A	W	R	E	L
Template Known Secondary structure			B		T	T	S		B																	T	T	B	S			T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G								T	T	T	T							S	S			T	T	G	G	G	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		T	A	N	F	A	F	F	P	V	Q	K	A	N	V	E	S	G	K	E	W	T	K	P	G	N	L	I	G	N	G	A	Y	V	L	K	E	R	V	V	N	.	E	K	L	V	V	V	P	N	T	H	Y	W	D	N	A	K	T	V	L	Q	K	V	T	F	L	P	I	N	Q	E	S	A	A	T	K	R	Y	L	A
Query Conservation																																										.
Alig confidence																																										.													.
Template Conservation																																																							.
Template Sequence		F	N	D	I	L	P	A	H	I	V	K	D	I	P	G	G	F	G	A	G	L	A	R	A	M	P	V	T	G	G	Q	F	R	V	E	T	I	D	P	Q	R	D	E	I	L	L	A	R	N	D	R	F	W	.	S	V	P	A	K	P	D	L	V	L	F	R	R	G	G	A	P	A	A	L	A	D	S	I	R	N
Template Known Secondary structure		S		S								T	T	S	T	T					T	T	S	S				S			S	S								T	T	T	T								T	T		S	.	S	S			S		S									S
Template Predicted Secondary structure																																																							.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.				.	.	.	.
Predicted Secondary structure									.																																																																		.	.	.
Query SS confidence									.																																																																		.	.	.
Query Sequence		G	D	I	D	I	T	E	.	S	F	P	K	N	M	Y	Q	K	L	L	K	D	I	P	G	Q	V	Y	T	P	P	Q	L	G	T	Y	Y	Y	A	F	N	T	Q	K	G	P	T	A	D	Q	R	V	R	L	A	L	S	M	T	I	D	R	R	L	M	T	E	K	V	L	G	T	G	E	.	.	.	K	P	A	W
Query Conservation									.																																																																		.	.	.
Alig confidence									.																																																																		.	.	.
Template Conservation
Template Sequence		G	D	T	Q	V	A	Q	V	H	G	G	A	A	T	F	A	Q	L	S	A	I	P	D	V	R	T	A	R	I	V	T	P	R	V	M	Q	L	T	L	R	A	Q	Q	P	K	L	A	D	P	Q	V	R	K	A	I	L	G	L	I	D	V	D	L	L	A	S	V	G	A	G	D	D	N	T	V	T	L	A	Q	A
Template Known Secondary structure		T	S																		T	S	T	T																		T	T	S	G	G	G		S											S												S	S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		H	F	T	P	D	V	T	A	G	F	T	P	E	P	S	P	F	E	Q	M	S	Q	E	E	L	N	A	Q	A	K	T	L	L	S	A	A	G	Y	.	.	.	.	.	.	.	.	.	.	G	P	Q	K	P	L	K	L	T	L	L	Y	N	T	S	E	N	H	Q	K	I	A	I	A	V	A	S	M	W	K	K	N
Query Conservation																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		Q	V	R	S	P	S	D	P	G	Y	V	P	T	A	P	.	.	.	.	.	.	P	A	M	T	R	D	D	A	L	E	L	L	R	D	A	G	Y	V	S	E	P	V	R	E	R	I	V	K	D	G	V	P	L	T	I	V	L	G	V	A	S	N	D	P	T	S	V	A	V	A	N	T	A	A	D	Q	L	R	N
Template Known Secondary structure		S	S	S		T	T	S	T	T							.	.	.	.	.	.															T	T													T	T											T	T
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.							.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.					.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																				.																														.	.	.	.
Query SS confidence																				.																														.	.	.	.
Query Sequence		L	G	V	D	V	K	L	Q	N	Q	E	W	K	T	Y	I	D	S	.	R	N	T	G	N	F	D	V	I	R	A	S	W	V	G	D	Y	N	E	P	S	T	F	L	T	L	L	T	S	.	.	.	.	T	H	S	G	N	I	S	R	F	N	N	P	A	Y	D	K	V	L	A	Q	A	S	T	E	N	T	V	K
Query Conservation																				.																														.	.	.	.
Alig confidence																				.											.																			.	.	.	.																											.	.
Template Conservation																															.																																																	.	.
Template Sequence		V	G	I	D	A	S	V	L	A	L	D	P	V	A	L	Y	G	D	A	L	V	N	N	R	V	D	A	V	V	.	G	W	R	Q	A	G	G	D	L	A	T	V	L	A	S	R	Y	G	C	R	A	L	Q	A	P	S	N	I	T	G	I	C	D	R	S	I	Q	P	R	I	D	A	A	L	D	G	T	D	.	.
Template Known Secondary structure		T	T																T	T	T	T	T	T			S				.						S	S												S	T	T					S		T	T	S				G	G	G									T	T	S	S	.	.
Template Predicted Secondary structure																															.																																																	.	.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	N	A	D	Y	N	A	A	E	K	I	L	M	E	Q	A	P	I	A	P	I	Y	Q	Y	T	N	G	R	L	I	K	P	W	L	K	G	Y	P	I	N	N	P	E	D	V	A	Y	S	R	T	M	Y	I	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	A	D	V	I	Q	A	V	E	P	R	L	W	N	M	A	T	V	L	P	I	L	Q	D	T	T	I	V	A	A	G	P	S	V	Q	N	V	S	L	T	G	A	V	P	V	G	I	V	G	D	A	G	D	W	T
Template Known Secondary structure																	T																	T	T			S			S				T	T	T		S		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.