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Job DescriptionP77348
Confidence100.00%DateThu Jan 5 12:28:03 GMT 2012
Rank18Aligned Residues471
% Identity18%Templatec2d5wA_
PDB info PDB header:peptide binding proteinChain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50. ........60.........70.........80...... . ..90.....
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Query Sequence  KQELVRHIKDEPASLDPA. . . . KAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQW. . . . . . . . . . . . . K. SNDNRIWT
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Template Sequence  DNSLVIGASQEPRVLAGDFLRVISNQAIKSEIEQYLFAPFIGFNADSQNFPVLATEVPTLENGRLRVTDIGGGKKRLEMD
Template Known Secondary structure  TS


SS
SS
TT
SSB




S
TTS
SSBSS


TTTT
TT
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   96...100.........110.........120.........130.........140.........150.........160.........170.....
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Query Sequence  FTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTAVDAHTLKIQLDKPLP
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Template Sequence  ITIRPDAKWSDGRPITTEDVAFYFEVGKAKGMPVLNPDFWE. . . . . . . . . . . . . . . . . . RVNVRIKDARNFTLIFEPAYY
Template Known Secondary structure  B
TT
B
TTS
B

STT


S
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SSSSS

T
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   85....90.........100.........110.........120..... ....130.........140......
 
   176...180...... ...190.........200.........210.........220.....
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Query Sequence  WFVNLTANFAF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FPVQKANVESGKEWTKPGNLIGNGAYVLKERVVNEKLVV
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Template Sequence  YDTYGPINTYAPKHIMGPEWERVKAAARGLDPDKDAEKLNELYRNFFLKFATPQALNRGAMVYSGPFKLKRWVPGNSIEM
Template Known Secondary structure  TTT
S
B




TT

TTTTTTTSTT




SSTTT
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   147..150.........160.........170.........180.........190.........200.........210.........220......
 
   226...230.. .......240.........250.........260.........270... ......280.........290.....
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Query Sequence  VPNTHYW. . . . DNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMY. . . . . . QKLLKDIPGQVYTPPQLGTYYY
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Template Sequence  ERNPNFPIKPEGGESKYVQKVVYRFIQNTNSLLVAVIGGSIDATSSVSLTFDQGRSPQLVRRAPGRFDIWFVPGAIWEHI
Template Known Secondary structure 
TT




TT
GGGS
S
SST

S
SSS

T
TT
TTT
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   227..230.........240.........250.........260.........270.........280.........290.........300......
 
   296...300... ......310.........320.........330.........340.........350.........360........
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Query Sequence  AFNTQKGP. . . . . . . TADQRVRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLL
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Template Sequence  DINKFENCQVVKDLGLNDKRTRQAILHALNREGLVKAFFDGLQPVAHTWIAPVNPLFNPNVKKY. . . . . EFDLKKAEALL
Template Known Secondary structure 


TTSTTTSTS
TTSS
B
SSSS
TTSTT

TTS


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   307..310.........320.........330.........340.........350.........360.........370 .........380.
 
   369370....... ..380.........390.........400.........410.........420.... .....
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Query Sequence  SAAGYGPQK. . . . . . . . . . . . . PLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSR. . . . . . NTGNF
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Template Sequence  AEMGWRKGPDGILQRTVNGRTVRFEIEYVTTAGNVVRERTQQFFAEDLKKIGIAVKINNAPSAVVFADEFIQRASECKWT
Template Known Secondary structure  TT

TTS
TT

BTT
TT


B
TBT
GGGTSS
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   382.......390.........400.........410.........420.........430.........440.........450.........460.
 
   430.........440 .........450...... ...460.........470.........480.........490......
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Query Sequence  DVIRASWVGDY. NEPSTFLTLLTSTHSG. . . . . . . . . . . . NISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQ
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Template Sequence  GMFEFAWVSNLQEDGSLFQYKNLNTGAIMVPTKENNYQGQNIGGWRNDEFDRLTSQAVLEFDPERRKQLFWRAQEIWAEE
Template Known Secondary structure  S

S



GGG
SB
TTT

B
S
SGGGTT
SS
TT



TT

S
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   462.......470.........480.........490.........500.........510.........520.........530.........540.
 
   497..500.........510.........520.......
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Query Sequence  APIAPIYQYTNGRLIKPWLKGYPINNPEDVA
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Template Sequence  LPALPLYFRANPYVVRKGLVNYVASAYSGGY
Template Known Secondary structure 
STTS



SSTTTT
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   542.......550.........560.........570..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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