Job Description P24255 Confidence 46.81% Date Thu Jan 5 11:41:39 GMT 2012 Rank 480 Aligned Residues 160 % Identity 9% Template c2qufB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus Resolution 2.80 Å

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		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	I	I	S	D	H	L	D	L	L	A	N	H	D	F	R	T	L	M	R	V	T	R	L	K	E	D	V	L	K	E	A	V	N	L	I	Q	S	L	D	P	R	P	G	Q	S	I	Q	T	G	E	P	E	Y	V	I	P	D	V	L	V	R	K	H	N	G	H	W	T	V	E	L	N	S	D	S	I	P
Query Conservation
Alig confidence													.																														.	.	.	.	.
Template Conservation													.																														.	.	.	.	.
Template Sequence		V	R	R	D	L	L	S	H	L	T	A	.	M	E	A	Y	F	S	L	L	S	S	K	V	S	V	S	S	T	A	V	A	K	H	L	K	I	M	E	R	E	.	.	.	.	.	G	V	L	Q	S	Y	Y	K	I	S	I	A	K	S	Y	V	F	T	L	T	P	E	M	F	W	Y	K	G	L	D	L	G	D	A
Template Known Secondary structure											T		.	T	T	T		S	S	S	S		S	S	S																T	T	.	.	.	.	.	T	S																			T	T										S
Template Predicted Secondary structure													.																														.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	Q	I	N	Q	H	Y	A	S	M	C	N	N	A	R	N	D	G	D	S	Q	F	I	R	S	N	L	Q	D	A	K	W	L	I	K	S	L	E	S	R	N	D	T	L	L	R	V	S	R	C	I	V	E	Q	Q	Q	A	F	F	E	Q	G	E	E	Y	M	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		E	L	R	D	F	E	I	S	L	S	G	L	D	T	E	P	S	T	.	.	.	.	.	L	K	E	M	I	T	D	F	I	K	A	N	K	E	L	E	K	V	L	E	A	F	K	T	I	E	S	Y	R	S	S	L	M	R	K	I	K	E	A	Y	L	K	E	I	G	D	M	T	Q	L	A	I	L	H	Y	L	L
Template Known Secondary structure											T	T	S		S				S	.	.	.	.	.																																										T	T	T			T	T
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
				363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	K	P	M	V	L	A	D	I	A	Q	A	V	E	M	H	E	S	T	I	S	R	V	T	T
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		L	N	G	R	A	T	V	E	E	L	S	D	R	L	N	L	K	E	R	E	V	R	E	K	I	S
Template Known Secondary structure				S												T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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