Job Description P24255 Confidence 99.94% Date Thu Jan 5 11:41:39 GMT 2012 Rank 1 Aligned Residues 126 % Identity 24% Template c2k9mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	Q	T	L	Q	D	Y	L	M	W	Q	V	E	L	T	P	F	S	D	T	D	R	A	I	A	T	S	I	V	D	A	V	D	E	T	G	Y	L	T	V	P	L	E	D	I	L	E	S	I	G	D	E	E	I	D	I	D	E	V	E	A	V	L	K	R	I	Q	R	F	D	P	V	G	V	A	A	K	D	L
Query Conservation
Alig confidence																	.																																				.	.	.
Template Conservation																	.																																				.	.	.
Template Sequence		Y	T	P	S	E	L	E	E	L	Q	Q	N	I	K	L	.	E	L	E	G	K	E	Q	E	L	A	L	E	L	L	N	Y	L	N	E	K	G	F	L	S	K	S	V	E	E	I	S	D	V	L	R	.	.	.	C	S	V	E	E	L	E	K	V	R	Q	K	V	L	R	L	E	P	L	G	V	C	S	K	D	V
Template Known Secondary structure																	.				S										T	T	S	B		T	T	S	S	B	S	S									T	T	.	.	.															T	S	S	S			T	T	T	S		T
Template Predicted Secondary structure																	.																																				.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	C	L	L	I	Q	L	S	Q	F	D	K	T	T	P	W	L	E	E	A	R	L	I	I	S	D	H	L	D	L	L	A	N	H	D	F	R	T	L	M	R	V	T	R	L	K	E	D	V	L	K	E	A	V	N	L	I	Q	S	L	D	P	R	P	G	Q	S
Query Conservation
Alig confidence																		.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	E	F	L	E	L	Q	I	E	E	I	Y	P	E	E	E	.	.	.	.	.	.	E	I	L	K	K	A	L	R	D	L	K	R	G	K	.	.	.	.	.	.	.	.	.	.	.	.	K	L	K	P	E	I	K	G	K	L	S	R	L	R	L	F	P	L	S	S
Template Known Secondary structure		T										S		S	T	T		.	.	.	.	.	.													S		.	.	.	.	.	.	.	.	.	.	.	.												T			S		S	S
Template Predicted Secondary structure																		.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.													.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions