Job Description P24255 Confidence 99.40% Date Thu Jan 5 11:41:39 GMT 2012 Rank 3 Aligned Residues 75 % Identity 21% Template c2k9lA_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 Resolution UNK

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		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	P	V	Y	Q	G	E	T	T	Q	T	L	Q	D	Y	L	M	W	Q	V	E	L	T	P	F	S	D	T	D	R	A	I	A	T	S	I	V	D	A	V	D	E	T	G	Y	L	T	V	P	L	E	D	I	L	E	S	I	G	D	E	E	I	D	I	D	E	V	E	A	V	L	K	R	I	Q	R	F	D
Query Conservation
Alig confidence																										.																																			.	.	.
Template Conservation																										.																																			.	.	.
Template Sequence		E	T	V	P	Y	Q	I	P	Y	T	P	S	E	L	E	E	L	Q	Q	N	I	K	L	E	.	L	E	G	K	E	Q	E	L	A	L	E	L	L	N	Y	L	N	E	K	G	F	L	S	K	S	V	E	E	I	S	D	V	L	R	.	.	.	C	S	V	E	E	L	E	K	V	R	Q	K	V	L	R	L	E
Template Known Secondary structure			S			S	S	S	S																	.			T	T	S												T	T	S	S	T	T												T	.	.	.	S														T	T
Template Predicted Secondary structure																										.																																			.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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