Job Description P36673 Confidence 95.01% Date Thu Jan 5 11:53:39 GMT 2012 Rank 139 Aligned Residues 194 % Identity 13% Template d3ckma1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.35

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.
Predicted Secondary structure																.	.																																																										.	.	.
Query SS confidence																.	.																																																										.	.	.
Query Sequence		V	A	I	I	V	T	R	L	D	S	L	S	E	N	.	.	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	G	I	T	E	E	M	L	.	.	.	A	H	W	Q
Query Conservation																.	.																																																										.	.	.
Alig confidence																.	.																														.	.																											.	.	.
Template Conservation																																															.	.
Template Sequence		I	G	L	L	L	P	L	S	G	D	G	Q	I	L	G	T	T	I	Q	S	G	F	N	D	A	K	G	N	S	T	I	P	V	Q	V	F	D	T	S	X	N	S	V	Q	D	.	.	I	I	A	Q	A	K	Q	A	G	I	K	T	L	V	G	P	L	L	K	Q	N	L	D	V	I	L	A	D	P	A	Q	I	Q
Template Known Secondary structure									S	S	T	T																T	T			S							T	T	T	S					.	.								T	T									S											G	G	G	G	T
Template Predicted Secondary structure																																															.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		S	S	L	V	L	L	A	R	.	.	.	.	.	.	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	H	P	V	A	A	L
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																				.	.	.
Template Conservation																																																			.	.	.
Template Sequence		G	X	D	V	L	A	L	N	A	T	P	N	S	R	A	I	P	Q	L	C	Y	Y	G	L	S	P	E	D	E	A	E	S	A	A	N	K	X	W	N	D	G	V	R	N	P	L	V	A	X	.	.	.	P	Q	N	D	L	G	Q	R	V	G	N	A	F	N	V	R	W	Q	Q	L	A	G	T	D	A	N	I	R
Template Known Secondary structure		T						S				T	T					T	T																						T	T			S						.	.	.		S	S																			S	S
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.				.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T	L	Q	L	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Y	N	L	P	A	D	V	T	Y	F	V	Q	E	N	N	S	N	T	T	A	L	Y	A	V	A	S	P	T	E	L	A	E	X	K	G	Y	L	T	N	I	V	P	N	L	A	I	Y	A	S
Template Known Secondary structure				S	S	T	T									S		T	T																					T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions