Return to main results Retrieve Phyre Job Id

Job DescriptionP36673
Confidence99.97%DateThu Jan 5 11:53:39 GMT 2012
Rank36Aligned Residues253
% Identity16%Templated2dria_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120........ .130.......
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Query Sequence  DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFT. . . . GITEEMLAH
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Template Sequence  KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   138.140........ .150.........160.........170.........180 .........190.........200.........210. .
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Query Sequence  WQSSLVLLARD. . . AKGFASVCYDDEGAIKILMQRLYDQGHRNISY. LGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA. A
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Template Sequence  ANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ
Template Known Secondary structure  TT

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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   213......220.........230 .........240.........250.........260.........270... ......280.......
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Query Sequence  LPGLAMKQGYENVAKVIT. . PETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFL. . . HPEIVTVDPGYAEA
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Template Sequence  PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   288.290.........300.........310....
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Query Sequence  GRQAACQLIAQVTGRSEPQQIIIPATL
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Template Sequence  GAKGVETADKVLKGEKVQAKYPVDLKL
Template Known Secondary structure  TT



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   241........250.........260.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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