Job Description P36673 Confidence 99.87% Date Thu Jan 5 11:53:39 GMT 2012 Rank 66 Aligned Residues 253 % Identity 8% Template d1tjya_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.30

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.
Predicted Secondary structure																																										.																																.	.	.	.
Query SS confidence																																										.																																.	.	.	.
Query Sequence		Q	S	D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	.	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	G	I	.	.	.	.	T	E	E	M
Query Conservation																																										.																																.	.	.	.
Alig confidence																																										.																																.	.	.	.
Template Conservation
Template Sequence		G	S	A	E	R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	E	A	G	K	A	L	G	I	D	V	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	V	N	N	F	V	N	Q	G	Y	D	A	I	I	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R
Template Known Secondary structure												S	S	S	S	S																		T									S	S																T	T		S							S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																														.	.
Query SS confidence																.	.	.	.																														.	.
Query Sequence		L	A	H	W	Q	S	S	L	V	L	L	A	R	D	.	.	.	.	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	.	.	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	H
Query Conservation																.	.	.	.																														.	.
Alig confidence																.	.	.	.																														.	.
Template Conservation
Template Sequence		A	M	Q	R	G	V	K	I	L	T	W	D	S	D	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	K	Q	L	G	S	M	L	V	E	M	A	A	H	Q	V	D	K	E	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A	K	I	S	Q	E	H	P	G
Template Known Secondary structure					T	T							S	S				G	G	G		S					S																				S	S	S								S		S	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		209				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.			.	.	280
Predicted Secondary structure			.	.	.																						.	.																																								.									.	.
Query SS confidence			.	.	.																						.	.																																								.									.	.
Query Sequence		P	.	.	.	V	A	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	.	.	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	.	M	K	F	L	H	P	E	I	.	.	V	T	V
Query Conservation			.	.	.																						.	.																																								.									.	.
Alig confidence			.	.	.																						.	.																																								.									.	.
Template Conservation
Template Sequence		W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	I	K	A	Y	P	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	R	N	N	L	A	I	V	G	F	S	T	P	N	V	M	R	P	Y	V	Q	R	G	T	V	K	E	F	G
Template Known Secondary structure											T	T																	S	S								S	T	T												T	T			S						B													T	S		S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	G	Y	A	E	A	G	R	Q	A	A	C	Q	L	I	A	Q	V	T	G	R	S	E	P	Q	Q	I	I	I	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	W	D	V	V	Q	Q	G	K	I	S	V	Y	V	A	N	A	L	L	K	N	M	P	M	N	V	G	D	S	L	D	I
Template Known Secondary structure																					T	T				S	T	T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions