Job Description P36673 Confidence 99.95% Date Thu Jan 5 11:53:39 GMT 2012 Rank 49 Aligned Residues 251 % Identity 14% Template d1guda_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.7

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.																																	.	.	.	.
Query SS confidence																																					.	.																																	.	.	.	.
Query Sequence		V	V	A	I	I	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	.	.	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	G	I	.	.	.	.	T	E	E	M	L	A	H
Query Conservation																																					.	.																																	.	.	.	.
Alig confidence																																					.	.																																	.	.	.	.
Template Conservation
Template Sequence		E	Y	A	V	V	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A	P	L	S	S	V	N	L	V	M	P	V	A	R	A	W	K
Template Known Secondary structure								S		S	S	S																		T									S	S	T	T														T	S	S									S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		138	.	140	.	.	.	.	.	.											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																																.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.																																.	.
Query Sequence		W	Q	S	S	L	V	L	L	A	.	.	.	.	.	.	.	.	.	.	R	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	.	.	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H
Query Conservation											.	.	.	.	.	.	.	.	.	.																																.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation
Template Sequence		K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A	S	G	E	A	R	R	N	G	A	T	E	A	F	K	K	A
Template Known Secondary structure		T	T							S	S										T	T				S																							G	G	G										S	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		206	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.
Predicted Secondary structure				.	.																								.	.																										.																						.	.	.
Query SS confidence				.	.																								.	.																										.																						.	.	.
Query Sequence		K	L	.	.	H	P	V	A	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	.	.	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	.	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	H	P	E	.	.	.	I
Query Conservation				.	.																								.	.																										.																						.	.	.
Alig confidence				.	.																								.	.																										.																						.	.	.
Template Conservation
Template Sequence		S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K	T	G	K	V	L	V	V	G	T	D	G	I	P	E	A	R	K	M	V	E	A	G	Q	M	T
Template Known Secondary structure		T	T										T	T																	T	T							S	S														T	T		T	T	T	S						S												T	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.							.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		V	T	V	D	P	G	Y	A	E	A	G	R	Q	A	A	C	Q	L	I	A	Q	V	T	G	R	S	.	.	.	.	.	.	E	P	Q	Q	I	I	I	P	A	T	L
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V	D	A	E	K	S	G	K	V	I	P	L	D	K	A	P	E	F	K	L	V	D	S	I	L
Template Known Secondary structure																									T	S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions