Job Description P36673 Confidence 78.55% Date Thu Jan 5 11:53:39 GMT 2012 Rank 490 Aligned Residues 199 % Identity 9% Template c3n0xA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution Resolution 1.50 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																.	.	.	.	.	.	.	.	.	.																												.												.
Query SS confidence															.	.																.	.	.	.	.	.	.	.	.	.																												.												.
Query Sequence		K	V	V	A	I	I	V	T	R	L	D	S	L	.	.	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	.	.	.	.	.	.	.	.	.	.	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	.	N	I	D	G	V	V	L	F	G	F	T	.
Query Conservation															.	.																.	.	.	.	.	.	.	.	.	.																												.												.
Alig confidence															.	.																.	.	.	.	.	.	.	.	.	.																												.												.
Template Conservation
Template Sequence		L	K	I	A	L	I	Y	G	K	T	G	P	L	E	A	Y	A	K	Q	T	E	T	G	L	X	X	G	L	E	Y	A	T	K	G	T	X	T	L	D	G	R	K	I	V	V	I	T	K	D	D	Q	S	K	P	D	L	S	K	A	A	L	A	E	A	Y	Q	D	D	G	A	D	I	A	I	G	T	S	S	S	A
Template Known Secondary structure											S	S	T	T																			T	T	T					T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
				129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																		.	.	.	.	.	.	.	.
Query SS confidence		.	.																		.	.	.	.	.	.	.	.
Query Sequence		.	.	G	I	T	E	E	M	L	A	H	W	Q	S	S	L	V	L	L	.	.	.	.	.	.	.	.	A	R	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y
Query Conservation		.	.																		.	.	.	.	.	.	.	.
Alig confidence		.	.																		.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		A	A	L	A	D	L	P	V	A	E	E	N	K	K	I	L	I	V	E	P	A	V	A	D	Q	I	T	G	E	K	W	N	R	Y	I	F	R	T	G	R	N	S	S	Q	D	A	I	S	N	A	V	A	I	G	K	Q	G	V	T	I	A	T	L	A	.	.	.	Q	D	Y	A	F	G	R	D	G	V	A	A	F
Template Known Secondary structure														T							S				G	G	G	G	T	T	T			T	T					S																	T	T								.	.	.		S	S
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure													.																										.	.	.	.
Query SS confidence													.																										.	.	.	.
Query Sequence		L	A	F	C	K	A	H	K	L	H	P	.	V	A	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	.	.	.	.	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T	L	Q	L	A	S	V
Query Conservation													.																										.	.	.	.
Alig confidence													.																										.	.	.	.
Template Conservation
Template Sequence		K	E	A	L	A	K	T	G	A	T	L	A	T	E	E	Y	V	P	T	T	T	T	D	F	T	A	V	G	Q	R	L	F	D	A	L	K	D	K	P	G	K	K	I	I	W	V	I	W	A	G	G	G	D	P	L	T	K	L	Q	D	X	D	P	K	R	Y	G	I	E	L	S
Template Known Secondary structure						T	T	T	T											T	T																T	T		S	S										S	S	S									T		G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions