Job Description P36673 Confidence 99.95% Date Thu Jan 5 11:53:39 GMT 2012 Rank 47 Aligned Residues 256 % Identity 14% Template c3l49D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 Resolution 2.30 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.
Query SS confidence																																																																								.	.	.	.
Query Sequence		G	Q	S	D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	.	.	.	.	G	I	T	E	E	M
Query Conservation																																																																								.	.	.	.
Alig confidence																																																																								.	.	.	.
Template Conservation
Template Sequence		S	L	E	G	K	T	I	G	I	T	A	I	G	T	D	H	D	W	D	L	K	A	Y	Q	A	Q	I	A	E	I	E	R	L	G	G	T	A	I	A	L	D	A	G	R	N	D	Q	T	Q	V	S	Q	I	Q	T	L	I	A	Q	K	P	D	A	I	I	E	Q	L	G	N	L	D	V	L	N	P	W	L	Q	K
Template Known Secondary structure				T	T								S				S																	T	T									T	T																		S						S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.
Predicted Secondary structure																.																														.																														.	.	.	.	.
Query SS confidence																.																														.																														.	.	.	.	.
Query Sequence		L	A	H	W	Q	S	S	L	V	L	L	A	R	D	.	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	.	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	.	.	.	.	.	L
Query Conservation																.																														.																														.	.	.	.	.
Alig confidence																.																														.																														.	.	.	.	.
Template Conservation
Template Sequence		I	N	D	A	G	I	P	L	F	T	V	D	T	A	T	P	H	A	I	N	N	T	T	S	N	N	Y	S	I	G	A	E	L	A	L	Q	M	V	A	D	L	G	G	K	G	N	V	L	V	F	N	G	F	Y	S	V	P	V	C	K	I	R	Y	D	Q	M	K	Y	V	L	E	A	F	P	D	V	K	I	I	E
Template Known Secondary structure					T	T							S				T	T		S																							T	T							B		S		T	T	S																T		T	T					S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230						.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.						.	270	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.																																							.	.	.	.	.
Query SS confidence																									.	.	.	.	.																																							.	.	.	.	.
Query Sequence		H	P	V	A	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	.	.	.	.	.	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T	L	Q	L	A	S	V	G	N	T	P	.	.	.	.	.	L	M	K	F	L	H	P	E	I
Query Conservation																									.	.	.	.	.																																							.	.	.	.	.
Alig confidence																									.	.	.	.	.																																							.	.	.	.	.
Template Conservation
Template Sequence		P	E	L	R	D	V	I	P	N	T	I	Q	S	A	Y	S	N	V	T	D	M	L	T	K	Y	P	N	E	G	D	V	G	A	I	W	A	C	W	D	V	P	M	I	G	A	T	Q	A	L	Q	A	A	G	R	T	D	I	R	T	Y	G	V	D	G	S	P	E	F	V	E	M	V	A	D	P	E	S	P	A	G
Template Known Secondary structure		S		B				S	S	S																S		S	T	T	S							S	S	S													T	T			S																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	V	D	P	G	Y	A	E	A	G	R	Q	A	A	C	Q	L	I	A	Q	V	T	G	R	S	E	P	Q	Q	I	I	I	P	A	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	A	A	Q	Q	P	S	E	I	G	K	L	A	V	Q	N	V	A	R	H	L	A	G	Q	E	V	K	P	F	T	F	A	P	A	V	L
Template Known Secondary structure																								T	T					S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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