Job Description P36673 Confidence 94.44% Date Thu Jan 5 11:53:39 GMT 2012 Rank 152 Aligned Residues 198 % Identity 12% Template c3ip5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine Resolution 1.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.										.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																	.	.	.	.	.	.	.	.	.																																						.	.	.
Query SS confidence															.	.																	.	.	.	.	.	.	.	.	.																																						.	.	.
Query Sequence		K	V	V	A	I	I	V	T	R	L	D	S	L	.	.	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	.	.	.	.	.	.	.	.	.	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	.	.	.
Query Conservation															.	.																	.	.	.	.	.	.	.	.	.																																						.	.	.
Alig confidence															.	.																	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation
Template Sequence		V	V	I	A	V	G	A	P	L	T	G	P	N	A	A	F	G	A	Q	I	Q	K	G	A	E	Q	A	A	K	D	I	N	A	A	G	G	I	N	G	E	Q	I	K	I	V	L	G	D	D	V	S	D	P	K	Q	G	I	S	V	A	N	K	F	V	A	D	G	V	K	F	V	V	G	H	F	N	S	G	V	S
Template Known Secondary structure											S	S	T	T																					T	T		B	T	T	B										T	T															T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																											.
Query SS confidence																					.	.	.	.	.	.	.	.																											.
Query Sequence		G	I	T	E	E	M	L	A	H	W	Q	S	S	L	V	L	L	A	R	.	.	.	.	.	.	.	.	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	.	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L
Query Conservation																					.	.	.	.	.	.	.	.																											.
Alig confidence																					.	.	.	.	.	.	.	.																											.										.	.
Template Conservation																																																																	.	.
Template Sequence		I	P	A	S	E	V	Y	A	E	N	G	I	L	E	I	T	P	A	A	T	N	P	V	F	T	E	R	G	L	W	N	T	F	R	T	C	G	R	D	D	Q	Q	G	G	I	A	G	K	Y	L	A	D	H	F	K	D	A	K	V	A	I	I	H	.	.	D	K	T	P	Y	G	Q	G	L	A	D	E	T	K	K
Template Known Secondary structure											T	T						S	S				G	G	G	G	S	S			T	T				S	S																			T	T								.	.		S	S
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		A	F	C	K	A	H	K	L	H	P	V	A	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	.	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T	L	Q	L	A
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		A	A	N	A	A	G	V	T	E	V	M	Y	E	G	V	N	V	G	D	K	D	F	S	A	L	I	S	K	M	K	E	A	G	V	S	I	I	Y	W	G	G	L	H	T	E	A	G	L	I	I	R	Q	A	A	D	Q	G	L	K	A	K	L	V	S
Template Known Secondary structure						T	T				S							T	T														T	T								S															T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions