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Job DescriptionP36673
Confidence96.80%DateThu Jan 5 11:53:39 GMT 2012
Rank82Aligned Residues211
% Identity15%Templatec3i09A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5960.........70.... .....80.........90.. .......100.........110....... ..120.......
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Query Sequence  GQSDKVVAIIVTRLDS. . . LSENLAVQTMLPAFYEQG. . . . . . . YDPIMMESQFSPQLVAEHLGVLKRR. NIDGVVLFGF
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Template Sequence  GADSVKIGFITDXSGLYADIDGQGGLEAIKXAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWXDRGGLDLLVGGTN
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   0.........10.........20.........30.........40.........50.........60.........70.........
 
   128 .130.........140....... ..150.........160.........170.........180.........190.....
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Query Sequence  T. . . GITEEMLAHWQSSLVLLAR. . . . . . . . . DAKGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRH
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Template Sequence  SATALSXNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTXALAKGTGSAVVKQGGKTWFFLT. . . ADYAFGKALE
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   104.....110.........120.........130.........140.........150.........160.........170 .........180
 
   196...200........ .210.........220.........230....... ..240.........250.........260.........270..
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Query Sequence  EAYLAFCKAHKLH. PVAALPGLAMKQGYENVAKVITPETTALL. CATDTLALGASKYLQEQRIDTLQLASVGNTPLMKF
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Template Sequence  KNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTXKLAALLXFINDV
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   181........190.........200.........210.........220.........230.........240.........250.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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