Job Description P36673 Confidence 94.61% Date Thu Jan 5 11:53:39 GMT 2012 Rank 149 Aligned Residues 193 % Identity 8% Template c3hutA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum Resolution 1.93 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.														.	.	.	.	.	.	.	.	.																																							.	.
Query SS confidence																		.	.														.	.	.	.	.	.	.	.	.																																							.	.
Query Sequence		D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	.	.	N	L	A	V	Q	T	M	L	P	A	F	Y	E	.	.	.	.	.	.	.	.	.	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	.	.
Query Conservation																		.	.														.	.	.	.	.	.	.	.	.																																							.	.
Alig confidence																		.	.														.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation
Template Sequence		A	L	L	L	G	Y	E	L	P	L	T	G	A	N	A	A	Y	G	R	V	F	Q	E	A	A	R	L	Q	L	D	R	F	N	A	A	G	G	V	G	G	R	P	V	D	I	L	Y	A	D	S	R	D	D	A	D	Q	A	R	T	I	A	R	A	F	V	D	D	P	R	V	V	G	V	L	G	D	F	S	S	T
Template Known Secondary structure											S	S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
				129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																					.	.	.	.	.	.	.
Query SS confidence		.	.																					.	.	.	.	.	.	.
Query Sequence		.	.	G	I	T	E	E	M	L	A	H	W	Q	S	S	L	V	L	L	A	R	D	.	.	.	.	.	.	.	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L
Query Conservation		.	.																					.	.	.	.	.	.	.
Alig confidence		.	.																					.	.	.	.	.	.	.																																			.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		V	S	X	A	A	G	S	I	Y	G	K	E	G	X	P	Q	L	S	P	T	A	A	H	P	D	Y	I	K	I	S	P	W	Q	F	R	A	I	T	T	P	A	F	E	G	P	N	N	A	A	W	X	I	G	D	G	F	T	S	V	A	V	I	G	.	.	.	V	T	T	D	W	G	L	S	S	A	Q	A	F	R
Template Known Secondary structure														T						S	S				G	G	G	T	T	S		T	T				S	S			G	G	G												T	T									.	.	.		S	S
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure														.																											.
Query SS confidence														.																											.
Query Sequence		A	F	C	K	A	H	K	L	H	P	V	A	.	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	.	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D
Query Conservation														.																											.
Alig confidence														.																											.
Template Conservation
Template Sequence		K	A	F	E	L	R	G	G	A	V	V	V	N	E	E	V	P	P	G	N	R	R	F	D	D	V	I	D	E	I	E	D	E	A	P	Q	A	I	Y	L	A	X	A	Y	E	D	A	A	P	F	L	R	A	L	R	A	R	G	S	A
Template Known Secondary structure							T	T											T	T																	S						S															T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions