Job Description P36673 Confidence 92.32% Date Thu Jan 5 11:53:39 GMT 2012 Rank 189 Aligned Residues 213 % Identity 7% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.											.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.											.
Query Sequence		G	Q	S	D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	.	.	.	.	.	.	.	.	.	.	G	Y	D	P	I	M	M	E	S	Q	.	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F
Query Conservation																																			.	.	.	.	.	.	.	.	.	.											.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		T	T	H	V	L	R	F	G	G	I	F	E	Y	V	E	S	G	P	M	G	A	E	E	L	A	F	R	F	A	V	N	T	I	N	R	N	R	T	L	L	P	N	T	T	L	T	Y	D	T	Q	K	I	N	L	Y	D	S	F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	A	I	F	G	P	S	H
Template Known Secondary structure																T	T	S	S																			S	S	S	S	S	S												T	T																		S						S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		128				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																										.	.	.	.	.	.	.
Query SS confidence			.	.	.																										.	.	.	.	.	.	.
Query Sequence		T	.	.	.	G	I	T	E	E	M	L	A	H	W	Q	S	S	L	V	L	L	A	R	D	A	K	G	F	A	.	.	.	.	.	.	.	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A
Query Conservation			.	.	.																										.	.	.	.	.	.	.
Alig confidence			.	.	.																										.	.	.	.	.	.	.																														.	.	.	.
Template Conservation																																																																			.	.	.	.
Template Sequence		S	S	S	A	N	A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T	R	W	K	H	Q	V	S	D	N	K	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	L	V	Q	F	F	K	W	K	T	V	T	V	V	Y	.	.	.	.	D	D	S	T	G	L	I	R	L	Q	E
Template Known Secondary structure															T	T			B				S						S	S					S					S	B		T	T	T												T	T		S							.	.	.	.	S	S	T						S
Template Predicted Secondary structure																																																																			.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																										.																			.	.
Query SS confidence																																										.																			.	.
Query Sequence		Y	L	A	F	C	K	A	H	K	L	H	P	V	A	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	.	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	.	.	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	H
Query Conservation																																										.																			.	.
Alig confidence																																										.																			.	.
Template Conservation
Template Sequence		L	I	K	A	P	S	R	Y	N	L	R	L	K	I	R	Q	L	P	A	D	T	K	D	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	S	H	E	M	A	A	G	I	L	K	Q	A	L	A	M	G	M	M	T	E	Y	Y	H	Y	I	F	T	T	L	D	L	F	A	L	D	V	E
Template Known Secondary structure				T	G	G	G	T	S	S										S	S	G	G	G											T	T								S																T			S	T	T								S		G	G	G	B			T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		275
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		237

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions