Job Description P36673 Confidence 100.00% Date Thu Jan 5 11:53:39 GMT 2012 Rank 4 Aligned Residues 303 % Identity 19% Template c3h5tA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum Resolution 2.53 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	R	L	T	I	K	D	I	A	R	L	S	G	V	G	K	S	T	V	S	R	V	L	N	N	E	S	G	V	S	Q	L	T	R	E	R	V	E	A	V	M	N	Q	H	G	F	S	P	S	R	S	A	R	A	M	R	G	Q	S	D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	N	L	A	V
Query Conservation
Alig confidence																																																				.	.	.	.	.															.	.	.
Template Conservation																																																				.	.	.	.	.															.	.	.
Template Sequence		Q	Q	Y	G	T	L	A	S	I	A	A	K	L	G	I	S	R	T	T	V	S	N	A	Y	N	R	P	E	Q	L	S	A	E	L	R	Q	R	I	L	D	T	A	E	D	M	G	Y	A	G	A	.	.	.	.	.	I	G	V	L	L	T	E	D	L	T	Y	A	F	E	.	.	.	D	M	A	S	V	D	F	L
Template Known Secondary structure				T	T										T	S												G	G	G	S															T	T					.	.	.	.	.						S	S		T	T					.	.	.	S
Template Predicted Secondary structure																																																				.	.	.	.	.															.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.																					.	.
Query SS confidence																																																	.																					.	.
Query Sequence		Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	.	G	I	T	E	E	M	L	A	H	W	Q	S	S	L	V	L	L	A	R	D	.	.	A	K	G	F	A	S	V	C	Y	D
Query Conservation																																																	.																					.	.
Alig confidence																																																	.																					.	.
Template Conservation
Template Sequence		A	G	V	A	Q	A	A	G	D	T	Q	L	T	L	I	P	A	S	P	A	S	S	V	D	H	V	S	A	Q	Q	L	V	N	N	A	A	V	D	G	V	V	I	Y	S	V	A	K	G	D	P	H	I	D	A	I	R	A	R	G	L	P	A	V	I	A	D	Q	P	A	R	E	E	G	M	P	F	I	A	P	N
Template Known Secondary structure								S	S	S												T	T												T				S						S			T	T											T							S	S			S		T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	.	.	.	.	H	P	V	A	A	L	P	G	L	A	M
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		N	R	K	A	I	A	P	A	A	Q	A	L	I	D	A	G	H	R	K	I	G	I	L	S	I	R	L	D	R	A	N	N	D	G	E	V	T	R	E	R	L	E	N	A	Q	Y	Q	V	Q	R	D	R	V	R	G	A	M	E	V	F	I	E	A	G	I	D	P	G	T	V	P	I	M	E	C	W	I	N	N	R
Template Known Secondary structure						T										T	T			S									S	S	S													T				T	T																T			G	G	G	S						S	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		219	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure														.	.																										.	.	.
Query SS confidence														.	.																										.	.	.
Query Sequence		K	Q	G	Y	E	N	V	A	K	V	I	T	.	.	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	.	.	.	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	H	P	E	I	V	T	V	D	P	G	Y	A	E	A	G	R	Q	A	A	C
Query Conservation														.	.																										.	.	.
Alig confidence														.	.																										.	.	.																		.	.
Template Conservation																																																													.	.
Template Sequence		Q	H	N	F	E	V	A	K	E	L	L	E	T	H	P	D	L	T	A	V	L	C	T	V	D	A	L	A	F	G	V	L	E	Y	L	K	S	V	G	K	S	A	P	A	D	L	S	L	T	G	F	D	G	T	H	M	A	L	A	.	.	R	D	L	T	T	V	I	Q	P	N	K	L	K	G	F	K	A	G	E
Template Known Secondary structure																T	T							S	S														T	T			T	T	T	T															.	.	T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	I	A	Q	V	T	G	R	S	E	P	Q	Q	I	I	I	P	A	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	L	K	M	I	D	K	E	Y	V	E	P	E	V	E	L	E	T	S	F
Template Known Secondary structure								T	T					S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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