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Job DescriptionP36673
Confidence100.00%DateThu Jan 5 11:53:39 GMT 2012
Rank10Aligned Residues250
% Identity20%Templatec3h5oB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.........90.........100.........110.........120........ .130.........140
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Query Sequence  KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFT. . GITEEMLAHWQS
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Template Sequence  RTVLVLIPSLANTVFLETLTGIETVLDAAGYQXLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQHAL
Template Known Secondary structure 
S
STT
TTTT

TT
TT

SSS


TTTT
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   71........80.........90.........100.........110.........120.........130.........140.........150
 
   141....... .150.........160.........170.........180.........190.........200........ .210.....
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Query Sequence  SLVLLARD. AKGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLH. . . . PVAALPG
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Template Sequence  PVVYXXDLADDGRCCVGFSQEDAGAAITRHLLSRGKRRIGFLG. . AQLDERVXKRLDGYRAALDAADCRDAGLEWLDPQP
Template Known Secondary structure 
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TT

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GGG
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   151........160.........170.........180.........190... ......200.........210.........220........
 
   216...220.........230 .........240.........250..... ....260.........270.........280.........290
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Query Sequence  LAMKQGYENVAKVIT. . PETTALLCATDTLALGASKYLQEQR. . . IDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQ
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Template Sequence  SSXQXGADXLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGFNDLQPAAWCTPPLTTVATPRRDIGVH
Template Known Secondary structure 


TT

SSTT

TTTT

SB

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   229230.........240.........250.........260.........270.........280.........290.........300........
 
   291........300..... ....310....
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Query Sequence  AACQLIAQVTGRSEP. QQIIIPATL
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Template Sequence  AAKALLQLIDGEEPASRRADLGFRL
Template Known Secondary structure  TT


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   309310.........320.........330...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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