Job Description P36673 Confidence 89.76% Date Thu Jan 5 11:53:39 GMT 2012 Rank 305 Aligned Residues 201 % Identity 8% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.										.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.
Predicted Secondary structure																					.	.															.	.	.	.	.	.	.	.	.													.															.
Query SS confidence																					.	.															.	.	.	.	.	.	.	.	.													.															.
Query Sequence		G	Q	S	D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	.	.	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	.	.	.	.	.	.	.	.	.	G	Y	D	P	I	M	M	E	S	Q	F	S	.	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	.	N	I	D	G	V	V	L	F
Query Conservation																					.	.															.	.	.	.	.	.	.	.	.													.															.
Alig confidence																					.	.															.	.	.	.	.	.	.	.	.													.															.
Template Conservation
Template Sequence		S	S	D	P	V	V	I	G	C	P	A	P	L	T	G	I	V	A	A	D	G	I	E	F	Q	R	G	I	Q	M	A	A	D	E	I	N	A	V	G	G	I	L	G	R	P	I	E	L	V	F	A	D	T	Q	S	K	G	V	D	V	V	I	Q	S	A	Q	R	L	I	D	R	D	N	A	S	A	L	I	A	G
Template Known Secondary structure			S	S											S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T			S					S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		126	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.														.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.									.	.	.	.	.	.	180	.
Predicted Secondary structure					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		G	F	T	.	.	.	G	I	T	E	E	M	L	A	H	W	Q	S	S	L	V	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	.	.	.	.	.	.	.	.	G	H	R	N	I	S	Y	L
Query Conservation					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	N	L	E	N	G	T	A	L	H	D	V	A	A	D	A	G	V	I	A	M	H	A	N	T	V	A	V	H	D	E	M	V	K	S	D	P	D	R	Y	W	G	T	F	Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I	A	I	I
Template Known Secondary structure				S	S		S											T																				T	T	T		T	T				S	S			T																	T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.																															.	.
Query SS confidence																															.																															.	.
Query Sequence		G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	H	P	V	.	A	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	C	A	T	.	.	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T
Query Conservation																															.																															.	.
Alig confidence			.	.	.																										.																															.	.
Template Conservation			.	.	.
Template Sequence		T	.	.	.	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A	K	L	R	A	D	P	P	A	V	I	V	V	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T	N	S
Template Known Secondary structure			.	.	.		S	S														G	G	G	G	T											S	S		S												S			S																				T	T	S			S
Template Predicted Secondary structure			.	.	.
Template SS confidence
		199				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		259	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	Y	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions