Job Description P36673 Confidence 99.90% Date Thu Jan 5 11:53:39 GMT 2012 Rank 63 Aligned Residues 253 % Identity 10% Template c3gbvB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis Resolution 2.20 Å

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		61	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.
Predicted Secondary structure													.																								.	.	.	.																																			.	.	.	.
Query SS confidence													.																								.	.	.	.																																			.	.	.	.
Query Sequence		S	D	K	V	V	A	I	I	V	T	R	.	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	.	.	.	.	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	.	.	.	.	G	I	T
Query Conservation													.																								.	.	.	.																																			.	.	.	.
Alig confidence													.																								.	.	.	.																																			.	.	.	.
Template Conservation
Template Sequence		K	K	Y	T	F	A	C	L	L	P	K	H	L	E	G	E	Y	W	T	D	V	Q	K	G	I	R	E	A	V	T	T	Y	S	D	F	N	I	S	A	N	I	T	H	Y	D	P	Y	D	Y	N	S	F	V	A	T	S	Q	A	V	I	E	E	Q	P	D	G	V	X	F	A	P	T	V	P	Q	Y	T	K	G	F
Template Known Secondary structure															T	T	S																T	G	G	G											T	T																		S								S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																			.	.	.																														.	.	.	.	.
Query SS confidence																			.	.	.																														.	.	.	.	.
Query Sequence		E	E	M	L	A	H	W	Q	S	S	L	V	L	L	A	R	D	.	.	.	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	.	.	.	.	.	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K
Query Conservation																			.	.	.																														.	.	.	.	.
Alig confidence																			.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		T	D	A	L	N	E	L	G	I	P	Y	I	Y	I	D	S	Q	I	K	D	A	P	P	L	A	F	F	G	Q	N	S	H	Q	S	G	Y	F	A	A	R	X	L	X	L	L	A	V	N	D	R	E	I	V	I	F	R	K	I	H	E	G	V	I	G	S	N	Q	Q	E	S	R	E	I	G	F	R	Q	Y	X	Q
Template Known Secondary structure									T							S	S			T	T	S			S																						S	T	T		S									B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		204	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.
Predicted Secondary structure										.																				.	.																																												.	.	.
Query SS confidence										.																				.	.																																												.	.	.
Query Sequence		A	H	K	L	H	P	V	A	.	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	.	.	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	.	.	.	H	P	E	I
Query Conservation										.																				.	.																																												.	.	.
Alig confidence										.																				.	.																									.																			.	.	.
Template Conservation																																																								.
Template Sequence		E	H	H	P	A	C	N	I	L	E	L	N	L	H	A	D	L	E	D	S	R	X	L	D	D	F	F	R	E	H	P	D	V	K	H	G	I	T	F	N	S	K	V	Y	I	I	G	E	Y	L	Q	Q	R	R	.	K	S	D	F	S	L	I	G	Y	D	L	L	E	R	N	V	T	C	L	K	E	G	T	V	S
Template Known Secondary structure					T	T	S									T	T															T	T							S	S	S		T										T	T	.			S							S												T	S
Template Predicted Secondary structure																																																								.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		V	T	V	D	P	G	Y	A	E	A	G	R	Q	A	A	C	Q	L	I	A	Q	V	.	T	G	R	S	E	P	Q	Q	I	I	I	P	A	T	L
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		F	L	I	A	Q	Q	P	E	L	Q	G	F	N	S	I	K	T	L	C	D	H	L	I	F	R	K	E	V	A	C	T	N	Y	X	P	I	D	L
Template Known Secondary structure																								T	S						S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions