Job Description P36673 Confidence 94.06% Date Thu Jan 5 11:53:39 GMT 2012 Rank 154 Aligned Residues 203 % Identity 10% Template c3eafA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix Resolution 2.00 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90														.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	V	V	A	I	I	V	T	R	L	D	S	L	.	.	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G
Query Conservation																.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	N	V	G	L	L	V	D	E	T	G	P	T	S	D	V	G	K	G	Y	S	L	G	A	E	L	A	F	K	Y	F	N	E	K	G	I	Y	T	K	D	G	V	R	V	N	I	N	Y	I	K	R	D	Y	A	Y	N	P	T	T	A	E	E	Y	Y	R	E	F	R	D	R	Y	G	V	I	A	I	I	G	W
Template Known Secondary structure											S	S	S	T	T																										T	T														T	T															T	T			S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		127	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.																				.	.	.	.	.																											.
Query SS confidence				.	.	.																				.	.	.	.	.																											.
Query Sequence		F	T	.	.	.	G	I	T	E	E	M	L	A	H	W	Q	S	S	L	V	L	L	A	R	.	.	.	.	.	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	.	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A
Query Conservation				.	.	.																				.	.	.	.	.																											.
Alig confidence				.	.	.																				.	.	.	.	.																											.										.	.
Template Conservation																																																																			.	.
Template Sequence		G	T	A	D	T	E	K	L	S	D	Q	V	D	T	D	K	I	T	Y	I	S	A	S	Y	S	A	K	L	L	V	K	P	F	N	F	Y	P	A	P	D	Y	S	T	Q	A	C	S	G	L	A	F	L	A	S	E	F	G	Q	G	K	L	A	L	A	Y	.	.	D	S	K	V	A	Y	S	R	S	P	I	G	A
Template Known Secondary structure																	T						S				G	G	G	T	T	S	T	T				S	S																				S								.	.		T	T						T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																										.
Query SS confidence																	.	.	.																										.
Query Sequence		Y	L	A	F	C	K	A	H	K	L	H	P	V	A	A	.	.	.	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	.	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T	L	Q	L	A	S	V	G	N	T
Query Conservation																	.	.	.																										.
Alig confidence																	.	.	.																										.																				.
Template Conservation																																																																	.
Template Sequence		I	K	K	A	A	P	S	L	G	L	Q	V	V	G	D	Y	D	L	P	L	R	A	T	E	A	D	A	E	R	I	A	R	E	X	L	A	A	D	P	D	Y	V	W	C	G	N	T	I	S	S	C	S	L	L	G	R	A	X	A	K	V	G	L	.	D	A	F	L	L	T	N	V	W	G
Template Known Secondary structure						T	G	G	G	T											T	T															T	T			S						S																T		.								G	G	G
Template Predicted Secondary structure																																																																	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions