Job Description P36673 Confidence 99.97% Date Thu Jan 5 11:53:39 GMT 2012 Rank 37 Aligned Residues 241 % Identity 18% Template c3clkB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum Resolution 2.08 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		I	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	.	.	G	I	T	E	E	M	L	A	H	W	Q	S	S	L	V	L	L
Query Conservation																																																															.	.
Alig confidence																																			.	.	.	.	.																								.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		V	I	A	A	V	V	S	N	F	A	Q	Q	I	L	D	G	I	Q	E	E	A	H	K	N	G	Y	N	L	I	I	V	Y	E	.	.	.	.	.	E	Q	K	H	A	L	L	T	A	I	E	R	P	V	X	G	I	L	L	L	S	I	A	L	T	D	D	N	L	Q	L	L	Q	S	S	D	V	P	Y	C	F	L
Template Known Secondary structure																							T	T	T	T									.	.	.	.	.												S			S						S														T	T
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		146		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure			.																																																																	.	.	.
Query SS confidence			.																																																																	.	.	.
Query Sequence		A	.	R	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	H	P	V	.	.	.	A	A	L	P	G	L	A	M	K	Q	G
Query Conservation			.																																																																	.	.	.
Alig confidence			.																																					.																												.	.	.
Template Conservation																																								.
Template Sequence		S	X	G	F	D	D	D	R	P	F	I	S	S	D	D	E	D	I	G	Y	Q	A	T	N	L	L	I	N	E	G	H	R	Q	I	G	I	A	G	.	I	D	Q	Y	P	Y	T	G	R	K	R	L	A	G	Y	K	K	A	L	K	E	A	N	I	A	I	N	Q	E	W	I	K	P	G	D	Y	S	Y	T	S	G
Template Known Secondary structure		S				S	S	S																					T	T	T			S					S	.				S	S																	T	T					G	G	G						S	S
Template Predicted Secondary structure																																								.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure											.																										.	.	.
Query SS confidence											.																										.	.	.
Query Sequence		Y	E	N	V	A	K	V	I	T	.	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	.	.	.	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	H	P	E	I	V	T	V	D	P	G	Y	A	E	A	G	R	Q	A	A	C	Q	L	I	A
Query Conservation											.																										.	.	.
Alig confidence											.																										.	.	.
Template Conservation
Template Sequence		E	Q	A	X	K	A	F	G	K	N	T	D	L	T	G	I	I	A	A	S	D	X	T	A	I	G	I	L	N	Q	A	S	S	F	G	I	E	V	P	K	D	L	S	I	V	S	I	D	G	T	E	X	C	K	I	T	R	P	Q	L	T	S	I	S	Q	D	F	F	Q	X	G	V	T	G	V	Q	Q	I	H	Q
Template Known Secondary structure										T	T				S					S	S														T	T			T	T	T	T										G	G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		298	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		Q	V	T	G	R	S	.	.	E	P	Q	Q	I	I	I	P	A	T	L
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		S	V	K	N	G	S	N	R	I	V	S	Q	Q	F	I	P	V	N	P
Template Known Secondary structure					T	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions