Job Description P36673 Confidence 85.01% Date Thu Jan 5 11:53:39 GMT 2012 Rank 430 Aligned Residues 56 % Identity 20% Template c2vz4A_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator tipa; PDBTitle: the n-terminal domain of merr-like protein tipal bound to2 promoter dna Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.													.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		T	I	K	D	I	A	R	L	S	G	V	G	K	S	T	V	S	R	V	L	.	.	.	.	.	.	.	.	.	.	.	.	N	N	E	S	G	V	S	Q	L	T	R	E	R	V	E	A	V	.	.	M	N	Q	H	G	F	S	P	S	R	S	A	R	A	M	R	G	Q	S
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		S	V	G	Q	V	A	G	F	A	G	V	T	V	R	T	L	H	H	Y	D	D	I	G	L	L	V	P	S	E	R	S	H	A	G	H	R	R	Y	S	D	A	D	L	D	R	L	Q	Q	I	L	F	Y	R	E	L	G	F	P	L	D	E	V	A	A	L	L	D	D	R	A
Template Known Secondary structure											T													T	S	S			S				S	S					B																	T	T											T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions