Job Description P36673 Confidence 99.67% Date Thu Jan 5 11:53:39 GMT 2012 Rank 73 Aligned Residues 232 % Identity 12% Template c2fqxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine Resolution 1.70 Å

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		63	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																																																																		.
Query SS confidence													.	.	.																																																																		.
Query Sequence		K	V	V	A	I	I	V	T	R	L	D	.	.	.	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	G	I	T	E	E	M	L	A	H	W	.
Query Conservation													.	.	.																																																																		.
Alig confidence													.	.	.																															.																																			.
Template Conservation																																														.
Template Sequence		F	V	V	G	M	V	T	D	S	G	D	I	D	D	K	S	F	N	Q	Q	V	W	E	G	I	S	R	F	A	Q	E	N	N	A	K	C	K	Y	V	T	A	S	T	D	.	A	E	Y	V	P	S	L	S	A	F	A	D	E	N	M	G	L	V	V	A	C	G	S	F	L	V	E	A	V	I	E	T	S	A	R
Template Known Secondary structure									S	S	S		T	T	S	S	S																T	T										S	G	.	G	G											T	T		S						S	T	T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
				139	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.											.	.	.																	.	.	.	.
Query SS confidence		.	.											.	.	.																	.	.	.	.
Query Sequence		.	.	Q	S	S	L	V	L	L	A	R	D	.	.	.	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	.	.	.	.	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	H	P
Query Conservation		.	.											.	.	.																	.	.	.	.
Alig confidence		.	.											.	.	.																	.	.	.	.																			.	.
Template Conservation																																																							.	.
Template Sequence		F	P	K	Q	K	F	L	V	I	D	A	V	V	Q	D	R	D	N	V	V	S	A	V	F	G	Q	N	E	G	S	F	L	V	G	V	A	A	A	L	K	A	K	E	A	G	K	S	A	V	G	F	I	V	.	.	G	M	E	L	G	M	M	P	L	F	E	A	G	F	E	A	G	V	K	A	V	D	P	D	I
Template Known Secondary structure			T	T	S						S	S				S		T	T																										T	T									.	.	S			S	T	T	T																T	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.						.	.
Predicted Secondary structure						.	.	.	.																																											.	.																						.	.	.	.	.
Query SS confidence						.	.	.	.																																											.	.																						.	.	.	.	.
Query Sequence		V	A	A	L	.	.	.	.	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	.	.	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	H	P	E	.	.	.	.	.	I	V
Query Conservation						.	.	.	.																																											.	.																						.	.	.	.	.
Alig confidence						.	.	.	.																																											.	.																						.	.	.	.	.
Template Conservation
Template Sequence		Q	V	V	V	E	V	A	N	T	F	S	D	P	Q	K	G	Q	A	L	A	A	K	L	Y	D	S	G	V	N	V	I	F	Q	V	A	G	G	T	G	N	G	V	I	K	E	A	R	D	R	R	L	N	G	Q	D	V	W	V	I	G	V	D	R	D	Q	Y	M	D	G	V	Y	D	G	S	K	S	V	V	L	T
Template Known Secondary structure									S		S	S															T	T									G	G	G														T	T										S			G	G	G	G	B		S	S	S		B	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	D	P	G	Y	A	E	A	G	R	Q	A	A	C	Q	L	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	M	V	K	R	A	D	V	A	A	E	R	I	S	K	M	A	Y	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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