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Job DescriptionP36673
Confidence99.96%DateThu Jan 5 11:53:39 GMT 2012
Rank44Aligned Residues252
% Identity13%Templatec2fn9A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.........90.........100.........110.........120........ .130........
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Query Sequence  KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFT. . . . GITEEMLAHW
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Template Sequence  GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEA
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S
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TT
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   139140........ .150.........160.........170........ .180.........190.........200.......
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Query Sequence  QSSLVLLARD. . . . AKGFASVCYDDEGAIKILMQRLYDQGHRNI. . . . . . . SYLGVPHSDVTTGKRRHEAYLAFCKAHKL
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Template Sequence  GIPVFCVDRGINARGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPE
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   208.210.........220.........230 .........240.........250.........260...... ...270.........
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Query Sequence  . . HPVAALPGLAMKQGYENVAKVIT. . PETTALLCATDTLALGASKYLQEQRIDTLQLASVGN. . . . TPLMKFLHPEIVT
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Template Sequence  FKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVAT
Template Known Secondary structure 
TT

TT

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TT


B

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   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   280.........290.........300.... .....310....
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Query Sequence  VDPGYAEAGRQAACQLIAQVTGRSE. PQQIIIPATL
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Template Sequence  IMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVEL
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   242.......250.........260.........270.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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