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Job DescriptionP36673
Confidence99.97%DateThu Jan 5 11:53:39 GMT 2012
Rank32Aligned Residues250
% Identity16%Templatec1jyeA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100 .........110.........120........ .130.........
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Query Sequence  VVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES. QFSPQLVAEHLGVLKRRNIDGVVLFGFT. . . GITEEMLAHWQ
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Template Sequence  LIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTN
Template Known Secondary structure  S
TTSTT


SSSTTT
S
S


TTT
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   63......70.........80.........90.........100.........110.........120.........130.........140..
 
   140........ .150.........160.........170.........180.........190.........200.........210. ......
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Query Sequence  SSLVLLARD. AKGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA. ALPGLA
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Template Sequence  VPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLA. GPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWS
Template Known Secondary structure  S
SSS
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   143......150.........160.........170.........180...... ...190.........200.........210.........220.
 
   218.220.........230 .........240.........250..... ....260.........270.........280.........290..
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Query Sequence  MKQGYENVAKVIT. . PETTALLCATDTLALGASKYLQEQR. . . IDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQAA
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Template Sequence  AMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSV
Template Known Secondary structure  TT


SSSTT

BTTTB
SB

GGGGGSSS

B

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   222.......230.........240.........250.........260.........270.........280.........290.........300.
 
   293......300.........310....
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Query Sequence  CQLIAQVTGRSEPQQIIIPATL
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Template Sequence  DRLLQLSQGQAVKGNQLLPVSL
Template Known Secondary structure  TT
S
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   302.......310.........320...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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