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Job DescriptionP76236
Confidence99.91%DateThu Jan 5 12:21:01 GMT 2012
Rank11Aligned Residues154
% Identity23%Templatec3qyyB_
PDB info PDB header:signaling protein/inhibitorChain: B: PDB Molecule:response regulator; PDBTitle: a novel interaction mode between a microbial ggdef domain and the bis-2 (3, 5 )-cyclic di-gmp
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   323......330.........340.........350... ......360.........370.........380.........390.........400
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Query Sequence  LSSKLAVHDVLTNIYNRRYFFNSVESLLSRP. . VVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQQSIRPDDI
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Template Sequence  DLKRHALFDPLTEALNRRGCEQAMRDSVTAAQREGWPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLGAQDW
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   130.........140.........150.........160.........170.........180.........190.........200.........
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  LARLEGEVFGLLFTELNSAQAKIIAERMRKNVELLTGFSNRYDVPEQMTISIGTVFSTGDTRNISLVMTEADKALREAKS
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Template Sequence  IGRWGGDEFLIGVHASEDEATLKLNQWLSMLEEAP. . . . . . . . . . . . LHVSAGSA. VCEVGIDATELYRRADAAMYRAKF
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   210.........220.........230.........240.... .....250.. .......260.........270......
 
   481........490
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Query Sequence  EGGNKVIIHH
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Template Sequence  SGGRRL. VRD
Template Known Secondary structure  TTSS.
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   282..... ..290
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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