Return to main results Retrieve Phyre Job Id

Job DescriptionP76236
Confidence99.76%DateThu Jan 5 12:21:01 GMT 2012
Rank14Aligned Residues148
% Identity18%Templatec3hvwA_
PDB info PDB header:lyaseChain: A: PDB Molecule:diguanylate-cyclase (dgc); PDBTitle: crystal structure of the ggdef domain of the pa2567 protein2 from pseudomonas aeruginosa, northeast structural genomics3 consortium target par365c
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   337..340.........350...... ...360.........370.........380.........390.........400.........410.....
Predicted Secondary structure 





.

















Query SS confidence 



















.


























































Query Sequence  YNRRYFFNSVESLLSRPVVK. DFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQQSIRPDDILARLEGEVFGLLFTE
Query Conservation   

  
   
          .      



 

 


  

  

  
  

  
       
 
 
 




 


  
Alig confidence 



















.







































.

















Template Conservation 


  
   
              
 

 

 
  

   
   

 

      
     .   
 
   
 
 

   
Template Sequence  YNRLRLQEDVSLRLQRDGALTVIAADLLPLALLNTIIRTLGYPFSNDLXLEARDRIRAELP. DFTLYKISPTRFGLLLPR
Template Known Secondary structure 

S
S


T.TS
TTG
Template Predicted Secondary structure 














.






Template SS confidence 















































































   175....180.........190.........200.........210.........220.........230..... ....240.........250...
 
   416...420.........430.........440.........450.........460... ......470.........480........
Predicted Secondary structure 
















.



Query SS confidence 















































.
























Query Sequence  LNSAQAKIIAERMRKNVELLTGFSNRYDVPEQMTISIGTVFSTGDTRN. ISLVMTEADKALREAKSEGGNKVII
Query Conservation       
      
   
               

 


          .   
   

 


 

  


 
  
Alig confidence 

























...


















.
























Template Conservation              
             ...       



            

  
  

  

  
     
Template Sequence  QQQEETESVCLRLLRAFESPVVCRGI. . . PIKANVGLGVLPLADDTLDGDQDWLRLVVSAADDARDRGVGWARY
Template Known Secondary structure  GGGGGTTS
TT...



GGGTGGGS

T
S

Template Predicted Secondary structure 








...














Template SS confidence 









































































   254.....260.........270......... 280.........290.........300.........310.........320....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions