Job Description P76236 Confidence 62.09% Date Thu Jan 5 12:21:01 GMT 2012 Rank 41 Aligned Residues 83 % Identity 18% Template c2oh2B_ PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase Resolution 3.05 Å

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		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.																						.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	R	V	G	D	K	V	L	V	S	I	V	D	I	I	Q	Q	S	I	R	P	D	D	I	L	A	R	L	E	G	E	V	F	G	L	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	L	N	S	A	Q	A	K	I	I	A	E	R	M	R	K	N	V	E	L	L
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																							.	.	.																																																								.
Template Sequence		F	D	K	Y	R	A	V	S	K	E	V	K	E	I	L	A	D	Y	D	P	N	.	.	.	F	M	A	M	S	L	D	E	A	Y	L	N	I	T	K	H	L	E	E	R	Q	N	W	P	E	D	K	R	R	Y	F	I	K	N	S	V	V	F	G	T	S	A	Q	E	V	V	K	E	I	R	F	R	I	E	Q	.
Template Known Secondary structure																					T	T	.	.	.			B		S	S	S						T								T	S			T	T	T	S	B								B			S	S															.
Template Predicted Secondary structure																							.	.	.																																																								.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	F	S	N	R	Y	D	V	P	E	Q	M	T	I	S	I	G	T	V	F	S	T	G	D	T	R	N	I	S	L	V	M	T	E	A	D	K	A	L	R	E	A	K	S	E	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	K	T	T	L	T	A	S	A	G	I	A	P	N	T	.	.	.	.	.	.	.	.	.	.	M	L	A	K	V	C	S	D	K	N	K	P	N	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.			S									S	S		.	.	.	.	.	.	.	.	.	.								T	T	T		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template SS confidence
											304	.	.	.	.	.	310	.	.	.	.	.	.	.											.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions