Job Description P76236 Confidence 49.55% Date Thu Jan 5 12:21:01 GMT 2012 Rank 48 Aligned Residues 83 % Identity 18% Template c1jihA_ PDB info PDB header:translation Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: yeast dna polymerase eta Resolution 2.25 Å

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		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.																									.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	M	L	V	D	I	N	Q	F	K	R	I	N	A	Q	W	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	G	D	K	V	L	V	S	I	V	D	I	I	Q	Q	S	I	R	P	D	D	I	L	A	R	L	E	G	E	V	F	G	L	L	F	T	E
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																																																															.	.	.
Template Sequence		L	I	P	I	H	T	A	V	F	K	K	G	E	D	F	W	Q	Y	H	D	G	C	G	S	W	V	Q	D	P	A	K	Q	I	S	V	E	D	H	K	V	S	L	E	P	Y	R	R	E	S	R	K	A	L	K	I	F	K	S	A	C	D	.	.	.	L	V	E	R	A	S	I	D	E	V	F	L	D	L	G	R
Template Known Secondary structure												T	T		S	S					T	T		S	T	T		S		T	T	S				S	S	S																								S	.	.	.							T	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		416	.	.	.	420																																																																									.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	S	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	I
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	C	F	N	M	L	M	F	D	N	E	Y	E	L	T	G	D	L	K	L	K	D	A	L	S	N	I	R	E	A	F	I	G	G	N	Y	D	I	N	S	H	L	P	L	I	P	E	K	I	K	S	L	K	F	E	G	D	V	F	N	P	E	G	R	D	L	I	T	D	W	D	D	V	I	L	A	L	G	S	Q
Template Known Secondary structure												S		B	S	S	S	S		B					T												S		T	T	S	B						G	G	G	G	G					S					T	T				S			S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	R	M	R	K	N	V	E	L	L	T	G	F	S	N	R	Y	D	V	P	E	Q	M	T	I	S	I	G	T	V
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.
Template Sequence		V	C	K	G	I	R	D	S	I	K	D	.	.	.	.	.	.	.	.	.	.	I	L	G	Y	T	T	S	C	G	L	S
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.											.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions