Job Description P52095 Confidence 99.22% Date Thu Jan 5 12:05:15 GMT 2012 Rank 218 Aligned Residues 308 % Identity 12% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230															.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	H	T	G	P	H	L	E	A	E	E	Y	I	A	R	T	F	G	A	.	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	H	L	L	M	M	N
Query Conservation																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	G	L	D	G	I	V	D	I	R	Q	I	W	A	D	L	L	G	V	P	V	E	Q	V	L	A	G	D	A	S	S	L	N	I	X	F	D	V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	V	K	W	I	C	P	V	P	G	Y	D	R	H	F	S	I	T	E	R	F
Template Known Secondary structure		S			S	S														T	S		G	G	G					S	S																			T	T		S	S		G	G	G	S	S									S												T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.				.	.	.	.	.	320		.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.							.	.	.							.							.	.
Query SS confidence																																																							.	.	.							.	.	.							.							.	.
Query Sequence		D	V	V	P	V	W	L	K	P	T	R	N	A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	T	Y	.	.	.	D	G	L	L	Y	N	.	.	.	T	D	W	I	K	Q	.	T	L	D	V	P	S	.	.
Query Conservation																																																							.	.	.							.	.	.							.							.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.									.	.	.							.	.	.							.							.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		G	F	E	X	I	S	V	P	X	N	.	.	.	.	.	.	.	.	.	.	.	E	D	G	P	D	X	D	A	V	E	E	L	V	K	N	P	Q	V	K	.	.	.	.	.	G	X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R
Template Known Secondary structure		T										.	.	.	.	.	.	.	.	.	.	.	T	T											T	T	S	T	T			.	.	.	.	.							S	S		T	T	T																		S	S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.												.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		327	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		I	H	F	D	S	A	W	V	.	.	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	Y	D	E	E	A	F	N	E	A	F	M	M	H	T	T	T	S	P	S	Y	P
Query Conservation										.	.
Alig confidence										.	.																																													.
Template Conservation																																																								.
Template Sequence		V	V	W	D	N	A	Y	A	V	H	T	L	T	D	E	F	P	E	V	I	D	I	V	G	L	G	E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L	A	G	A	G	V	S	F	F	.	L	T	S	A	E	N	R	K	W	Y	T	G	H	A	G	I	R	G	I	G	P	N	K	V	N
Template Known Secondary structure							T	T	T	T		B	S	S	S															T	T		T	T								S	T	T	T	S		T	T	T	S					.																			S
Template Predicted Secondary structure																																																								.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		I	V	A	S	V	E	T	A	A	A	.	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P	V	A	P	G	E	Q	W	H	G	F	N	D	A	D	A	D	H
Query Conservation												.
Alig confidence												.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	A	H	A	R	Y	F	G	D	A	E	G	V	R	A	V	X	R	K	H	A	A	S	L	A	P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A	Q	W	T	V	P	A	G	G	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S																															G	G	G	T								S	B	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.											.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	.	.	.	.	.	.	.	.	.	.	E	K	T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K	A	M	G	L	L	R	G	L
Query Conservation																																												.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.														.
Template Conservation		.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.																																										.
Template Sequence		.	.	.	.	.	.	.	I	S	L	D	V	V	.	.	.	.	.	.	.	.	.	.	.	P	G	T	A	S	R	V	A	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	Y	P	L	R	Q	D	P	E	N	K	N	L	R	L	A	P	S	.	L	P	P	V	E	E	L	E	V	A	X	D	G	V
Template Known Secondary structure		.	.	.	.	.	.	.						S	.	.	.	.	.	.	.	.	.	.	.	T	T												T	T						T	T	T	T	S	G	G	G			T	T	S								S	.	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.																																										.
Template SS confidence
									352	.	.	.	.	.												.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.
		554	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	F	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	C	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions