Job Description P52095 Confidence 99.30% Date Thu Jan 5 12:05:15 GMT 2012 Rank 209 Aligned Residues 315 % Identity 14% Template c3oksB_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis Resolution 1.80 Å

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		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																									.	.	.																													.
Query SS confidence																								.	.																									.	.	.																													.
Query Sequence		E	L	G	S	L	L	D	H	T	G	P	H	L	E	A	E	E	Y	I	A	R	T	.	.	F	G	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	.	.	.	A	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	H	L	L	M	M	N	D	V	V	P	.
Query Conservation																								.	.																									.	.	.																													.
Alig confidence																								.	.													.												.	.	.																													.
Template Conservation																																						.
Template Sequence		T	C	F	M	V	T	P	Y	E	G	Y	V	A	V	C	E	Q	L	N	R	L	T	P	V	R	G	D	K	R	S	A	L	F	N	S	G	.	S	E	A	V	E	N	A	V	K	I	A	R	S	H	T	H	K	P	A	V	V	A	F	D	H	A	Y	H	G	R	T	N	L	T	M	A	L	T	A	K	V	M	P
Template Known Secondary structure			T	T	T	T	S																S	S			S	S							S	S		.																								T	T					S	S											T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
													260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.					.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																					.	.	.														.	.							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																					.	.	.														.	.							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	V	W	L	K	P	T	R	N	A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	.	.	.	Q	W	P	V	H	A	V	I	T	N	S	T	Y	.	.	D	G	L	L	Y	N	.	.	.	.	T	D	W	I	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																					.	.	.														.	.							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																					.	.	.														.	.							.	.	.	.
Template Conservation
Template Sequence		Y	K	D	G	F	G	P	F	A	P	E	I	Y	R	A	P	L	S	Y	P	F	R	D	A	E	F	G	K	E	L	A	T	D	G	E	L	A	A	K	R	A	I	T	V	I	D	K	Q	I	G	A	D	N	L	A	A	V	V	I	E	P	I	Q	G	E	G	G	F	I	V	P	A	D	G	F	L	P	T	L	L
Template Known Secondary structure		T	T	T	T			S			S	S													G	G	G						T																	T		G	G	G								S	S	B	T	T	T	T		B				T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	Y	D	E	E	A	F	N	E	A	F	M	M	H	T
Query Conservation									.	.
Alig confidence									.	.																					.	.	.	.	.	.													.	.													.	.	.
Template Conservation																															.	.	.	.	.	.													.	.													.	.	.
Template Sequence		D	W	C	R	K	N	D	V	V	F	I	A	D	E	V	Q	T	G	F	A	R	T	G	A	M	F	A	C	E	.	.	.	.	.	.	H	E	G	I	D	P	D	L	I	V	T	A	.	.	G	I	A	G	G	L	P	L	S	A	V	T	.	.	.	G	R	A	E	I	M	D	S	P	H	V	S	G	L	G	G
Template Known Secondary structure							T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	.	.	.	.	.	.	T	T	T				S						.	.		T	T	T	T	S	S						.	.	.							T		S		T	T	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.													.	.													.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.							280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P	V	A	P	G	E	Q	W	H	G	F	N
Query Conservation
Alig confidence																								.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Y	G	G	N	P	I	A	C	A	A	A	L	A	T	I	E	T	I	E	S	E	.	.	.	G	L	V	A	R	A	Q	Q	I	E	K	I	M	K	D	R	L	G	R	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	S	S																		T	.	.	.	T																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510									.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.																			.	.
Query SS confidence																																			.	.	.	.	.	.	.	.																			.	.
Query Sequence		D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P	.	.	.	.	.	.	.	.	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	K	T	.	.	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K	A	M
Query Conservation																																			.	.	.	.	.	.	.	.																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																			.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	E	D	D	R	I	G	D	V	R	G	R	G	A	M	I	A	M	E	L	V	K	A	G	T	T	E	P	D	A	D	L	T	K	A	L	C	A	G	A	H	A	A	G	V	I	V	L	S	C	G	T	Y	G	N	V	V	R	F	L	P	P	L	S	I	G	D	D	L	L	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.				T	T								T	T							B	S	T	T	S			B															T	T								T	T	S									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		548	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	L	R	G	L	T	E	F	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	L	D	V	L	E	E	V	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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