Job Description P52095 Confidence 99.50% Date Thu Jan 5 12:05:15 GMT 2012 Rank 177 Aligned Residues 318 % Identity 14% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.									.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.
Predicted Secondary structure																							.	.	.	.	.	.	.	.																		.	.																													.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.																		.	.																													.	.	.
Query Sequence		D	H	T	G	P	H	L	E	A	E	E	Y	I	A	R	T	F	G	A	E	Q	.	.	.	.	.	.	.	.	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	.	.	Y	A	A	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	H	L	L	M	M	N	D	V	.	.	.	V
Query Conservation																							.	.	.	.	.	.	.	.																		.	.																													.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																		.	.																													.	.	.
Template Conservation
Template Sequence		P	V	A	G	F	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S	L	H	I	G	F	E	F	L	H	L	W	M	P	K	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V
Template Known Secondary structure			T	T																T	T						T	T								S																		T	T							S	S			T												T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.
Predicted Secondary structure																																																		.	.									.	.	.													.	.
Query SS confidence																																																		.	.									.	.	.													.	.
Query Sequence		P	V	W	L	K	P	T	R	N	A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	.	.	T	Y	D	G	L	L	Y	N	.	.	.	T	D	W	I	K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S
Query Conservation																																																		.	.									.	.	.													.	.
Alig confidence																		.	.	.	.	.	.																		.	.	.							.	.									.	.	.													.	.
Template Conservation																		.	.	.	.	.	.																		.	.	.
Template Sequence		P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	.	.	.	.	.	.	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	.	.	.	F	L	F	H	A	C	A	H	N	P	S	G	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K	H	I	A	F	F	D	S
Template Known Secondary structure									B		T	T	S		S	S	B	.	.	.	.	.	.												S		T	T			.	.	.					S	S	S		T	T	T																				T
Template Predicted Secondary structure																		.	.	.	.	.	.																		.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.							.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.												.
Predicted Secondary structure																																							.	.																.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.																.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	.	.	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	.	Y	D	E	E	A	F	N	E	A	F	M	M	H	.	.	.	.	.	.	.	.	.	.	.	T
Query Conservation																																							.	.																.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																																				.	.																.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		A	.	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	G	L	Y	G	E	R	I	G	C	L	H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T	L	Q	I	R	K	T
Template Known Secondary structure		S	.		T	T	T	S	S	S						T										T										T	T	T	S			G	G	G											S		S	S	S																					T	T
Template Predicted Secondary structure			.
Template SS confidence
		222		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P	V	A	P	G	E	Q	W	H	G	F	N
Query Conservation
Alig confidence												.	.	.								.	.	.																																		.																.	.	.	.	.	.	.	.
Template Conservation												.	.	.								.	.	.																																		.																.	.	.	.	.	.	.	.
Template Sequence		W	S	M	S	A	I	H	G	A	Y	.	.	.	I	V	Q	V	I	V	H	.	.	.	D	K	R	L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R	I	H	R	M	R	S	L	L	H	A	S	L	A	K	R	.	K	T	P	G	P	G	S	K	G	T	W	D	H	I	L	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	S								.	.	.							T	.	.	.	S																																T	.	T				S	T	T	T	T			T				.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.								.	.	.																																		.																.	.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310				.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	K	T	G	P	Y	N	L	L	F	L	F	S	I	.	G	I	D	K	T	K	A	M	G	L	L	R	G	L	T	E	F
Query Conservation																																																																.
Alig confidence		.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.					.
Template Conservation		.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	T	A	I	G	M	F	T	F	T	.	.	.	.	.	.	.	.	.	.	.	.	G	L	T	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K	A	G	G	.	.	.	.	.	R	M	S	M	C	G	L	T	E	S	N	C	D	Y	V	A	E	A	I	H	D	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.				S	S					.	.	.	.	.	.	.	.	.	.	.	.																			B	T	G	G	G	.	.	.	.	.				G	G	G			T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
											366	.	.	.	370	.	.	.	.													.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.						.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		557	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	K	L
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions