Job Description P52095 Confidence 99.02% Date Thu Jan 5 12:05:15 GMT 2012 Rank 229 Aligned Residues 318 % Identity 12% Template c3i5tB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 Resolution 2.00 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.									.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																						.	.																									.	.	.	.	.	.	.	.																									.	.
Query SS confidence																						.	.																									.	.	.	.	.	.	.	.																									.	.
Query Sequence		S	L	L	D	H	T	G	P	H	L	E	A	E	E	Y	I	A	R	T	F	.	.	G	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	A	.	.	.	.	.	.	.	.	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	H	L	L	M	M	N	D	.	.
Query Conservation																						.	.																									.	.	.	.	.	.	.	.																									.	.
Alig confidence																						.	.																									.	.	.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence		P	W	Y	M	A	T	S	P	A	A	R	L	A	E	K	I	A	T	L	T	P	G	D	L	N	R	I	F	F	T	T	G	G	S	T	A	V	D	S	A	L	R	F	S	E	F	Y	N	N	V	L	G	R	P	Q	K	K	R	I	I	V	R	Y	D	G	Y	H	G	S	T	A	L	T	A	A	C	T	G	R	T
Template Known Secondary structure		T	T	T															T	T	S	S	T	T								S	S																			T	T		T	T								T	T					S	S						T				G
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
													257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.					.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																					.																	.	.							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																					.																	.	.							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	V	V	P	V	W	L	K	P	T	R	N	A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	.	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	T	Y	.	.	D	G	L	L	Y	N	.	.	.	.	T	D	W	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																					.																	.	.							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																					.						.	.	.									.	.							.	.	.	.
Template Conservation																																																							.	.	.
Template Sequence		G	N	W	P	N	F	D	I	A	Q	D	R	I	S	F	L	S	S	P	N	P	R	H	A	G	N	R	S	Q	E	A	F	L	D	D	L	V	Q	E	F	E	D	R	I	E	S	L	G	P	D	T	I	A	.	.	.	A	F	L	A	E	P	I	L	A	S	G	G	V	I	I	P	P	A	G	Y	H	A	R	F
Template Known Secondary structure		G	G		T	T	S					T	T									G	G	G		T	T	S																						G	G	G			.	.	.						S	S	B	T	T	T	T	S	B				T	T
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		319	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	Y	D	E	E	A	F	N	E	A	F	M	M	H
Query Conservation										.	.
Alig confidence										.	.																													.	.	.	.	.						.	.					.	.	.	.
Template Conservation																																								.	.	.	.	.						.	.					.	.	.	.
Template Sequence		K	A	I	C	E	K	H	D	I	L	Y	I	S	D	E	V	V	T	G	F	G	R	C	G	E	W	F	A	S	E	K	V	F	G	V	V	P	D	.	.	.	.	.	I	I	T	F	A	.	.	K	G	V	T	.	.	.	.	S	G	Y	V	P	L	G	G	L	A	I	S	E	A	V	L	A	R	I	S	G	E
Template Known Secondary structure								T	T								T	T	T	T	T	T	T	T	S	S	S						T	T					S	.	.	.	.	.						.	.	G	G	G	G	.	.	.	.	T	T	S	S														T	T	S	G	G
Template Predicted Secondary structure																																								.	.	.	.	.						.	.					.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.			.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		397											.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.
Query Sequence		T	.	.	.	.	.	.	.	.	.	.	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P
Query Conservation			.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.																							.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	K	G	S	W	F	T	N	G	Y	T	Y	S	N	Q	P	V	A	C	A	A	A	L	A	N	I	E	L	M	E	R	E	.	.	.	G	I	V	D	Q	A	R	E	M	A	D	Y	F	A	A	A	L	A	S	L	R	D	L	P	G	V	A	E	T	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G		T	T								T	T	T	T																		T	.	.	.	T																		T	T	T	T	S	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	P	G	E	Q	W	H	G	F	N	D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	K	T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	L	V	G	C	V	Q	C	L	L	G	T	A	E	D	K	A	F	.	.	.	.	.	T	L	K	I	D	E	R	C	F	E	L	G	L	I	V	.	R	P	L	G	D	L	C	V	I	S	P	P	L	I	I	S	R	A	Q	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T																	.	.	.	.	.											T	T				.				T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																.
Template SS confidence
																						378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.						.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	L	L	R	G	L	T	E	F	K	R	S	Y	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	M	V	A	I	M	R	Q	A	I	T	E	V	S	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions