Job Description P52095 Confidence 99.98% Date Thu Jan 5 12:05:15 GMT 2012 Rank 13 Aligned Residues 315 % Identity 14% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		L	E	A	E	E	Y	I	A	R	T	F	G	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	A	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	.	.	.	H	L	L	M	M	N	D	V	V	P	V	W	L	K	P	T	R	N	A	L	G	I	L	G	G
Query Conservation																																																						.	.	.
Alig confidence																																																						.	.	.																								.	.
Template Conservation																																																																																.	.
Template Sequence		N	L	A	R	D	R	A	K	A	L	F	G	A	E	F	A	N	V	Q	P	H	S	G	A	Q	A	N	A	A	V	L	H	A	L	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	T	H	L	.	.
Template Known Secondary structure													T		S							S	S															T	T								G	G	G	T			G	G	G	T		T	T	S					S	S									T	T	T		S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	T	Y	D	G	L	L	Y	N	T	D	W	I	K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E
Query Conservation																																																						.	.
Alig confidence		.	.	.	.	.																	.	.	.	.	.																											.	.														.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	I	D	M	D	A	V	R	A	T	A	L	E	F	R	P	K	.	.	.	.	.	V	I	I	A	G	W	S	A	Y	P	R	V	L	D	F	A	A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	.	.	.	.	.	.	.	A	G	L	H	P	S
Template Known Secondary structure		.	.	.	.	.																S	.	.	.	.	.							S	S			S															T								T	T	T						.	.	.	.	.	.	.	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.																	.	.	.	.	.																																										.	.	.	.	.	.	.
Template SS confidence
							151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	Y	D	E	E	A	F	N	E	A	F	M	M	H	T	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A
Query Conservation
Alig confidence						.															.	.											.
Template Conservation						.															.	.											.
Template Sequence		P	V	P	H	.	A	D	V	V	S	T	T	V	H	T	L	G	G	G	.	.	R	S	G	L	I	V	G	K	Q	Q	.	Y	A	K	A	I	N	S	A	V	F	P	G	Q	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A
Template Known Secondary structure		S	T	T	T	.		S													.	.	S								G	G	.	G									T	T	T	T		S	S																	T	S
Template Predicted Secondary structure						.															.	.											.
Template SS confidence
		214	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		433	.	.	.	.	.	.	440					.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		L	H	F	R	K	E	V	Q	.	.	.	.	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P	V	A	P	G	E	Q	W	H	G	F	N	D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		R	I	I	A	D	R	L	M	A	P	D	V	A	K	A	G	V	S	V	V	S	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	H	L	V	L	V	D	L	.	.	.	.	.	.	.	.	.	R	D	S	P
Template Known Secondary structure									S	S						T	T				G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S							.	.	.	.	.	.	.	.	.	T	T	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.																																			.	.	.	.	.	320	.	.	.										.	.	.	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.															.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.			.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Query Sequence		I	P	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	K	T	G	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	L	F	L	F	S	I	G	I	D	K	T	K	A	M	G	L	L	R	G	L	T	E	F	K	R	S	Y	D	.	.	L	N	L	R	I	K	N	M	L	P	D
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation
Template Sequence		L	D	G	Q	A	A	E	D	L	L	H	E	V	G	I	T	V	N	R	N	A	V	P	N	D	P	R	P	P	M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F	T	E	V	A	D	I	I	A	T	A	L	A	T	G	S	S	V	D	V	S	A	L	K	D	R	A	T	R
Template Known Secondary structure														T	T									T	T		S	S		T	T	T		S													T																			S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		573	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	A	E	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	R	A	F	P
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions