Job Description P52095 Confidence 99.29% Date Thu Jan 5 12:05:15 GMT 2012 Rank 210 Aligned Residues 356 % Identity 12% Template c3g7qA_ PDB info PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution Resolution 1.80 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		T	K	A	L	F	T	Y	V	K	E	R	K	Y	T	F	C	T	P	G	H	M	G	G	T	A	Y	Q	K	S	P	V	G	C	L	F	Y	D	F	F	G	G	N	T	L	K	A	D	V	S	I	S	V	T	E	L	G	S	L	L	D	H	T	G	P	H	L	E	A	E	E	Y	I	A	R	T	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																			.																																.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																			.																																.	.	.	.	.	.	.
Template Sequence		I	T	R	L	X	E	D	L	N	D	G	A	I	X	L	G	G	.	G	N	P	A	H	I	P	A	X	Q	D	Y	F	Q	T	L	L	T	D	X	V	E	S	G	K	A	A	D	A	L	C	.	.	.	.	.	.	.	N	Y	D	G	P	Q	G	K	T	A	L	L	N	A	L	A	V	L	L	R	E	T	L	G
Template Known Secondary structure																	S		.																								T								.	.	.	.	.	.	.	S	T	T		T	T	S
Template Predicted Secondary structure																			.																																.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.								.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
				208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure		.	.																																		.	.
Query SS confidence		.	.																																		.	.
Query Sequence		.	.	F	G	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	A	P	S	G	S	T	L	L	I	.	.	D	R	N	C	H	K	S	L	A	H	L	L	M	M	N	D	V	V	P	V	W	L	K	P	T	R	N	A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	D
Query Conservation		.	.																																		.	.
Alig confidence		.	.						.																												.	.																									.							.	.	.	.	.	.	.	.	.
Template Conservation									.																																																						.							.	.	.	.	.	.	.	.	.
Template Sequence		W	D	I	E	P	Q	N	.	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	S	T	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	D	L	F	V	S	A	R	P	N	I	E	L	L	P	.	E	G	Q	F	K	Y	.	.	.	.	.	.	.	.	.	H	V	D
Template Known Secondary structure						G	G	G	.					S														S	B				B					S	S																							G	.	G	G					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.																																																						.							.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.										.	160	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																									.									.	.	.													.	.
Query SS confidence																									.									.	.	.													.	.
Query Sequence		S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	.	T	Y	D	G	L	L	Y	N	.	.	.	T	D	W	I	K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E	R	V	A	G	K
Query Conservation																									.									.	.	.													.	.
Alig confidence														.	.	.	.	.							.									.	.	.													.	.									.																				.	.	.
Template Conservation														.	.	.	.	.																																									.																				.	.	.
Template Sequence		F	E	H	L	H	I	G	E	E	T	G	X	.	.	.	.	.	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	X	K	L	D	R	L	A	N	Q	H	N	I	P	L	V	I	D	N	A	Y	G	.	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	.	.	.
Template Known Secondary structure		G	G	G					T	T				.	.	.	.	.					S	S		T	T	T																			T	T								T	T		.	T	T	T	T			B		S								T	T		.	.	.
Template Predicted Secondary structure														.	.	.	.	.																																									.																				.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	Y	D	E	E	A	F	N	E	A	F	M	M	H	T	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	I	L	C	X	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N	D	K	T	I	T	A	I	A	N	X	N	G	I	I	S	L	A	P	G	G	X	G	P	A	X	X	C	E	X	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	Q	T	I	A
Template Known Secondary structure		.	.						S	G	G	G	T		T	T	S																												S												T	T									T
Template Predicted Secondary structure		.	.
Template SS confidence
				242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P	V	A	P	G	E	Q	W	H	G	F	N	D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P	A	A	L	V	A	K	F
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Sequence		I	I	R	R	Y	L	S	E	E	R	C	L	I	H	K	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	F	L	W	L	W	F	K	D	L	.	.	.	.	.	.	.	.	.	P	I	T	T	E	L	L	Y	Q	R
Template Known Secondary structure									T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	S	S							T	T		.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.																																	.	.	.	340	.	.	.	.	.	.	.	.										.	350	.	.	.	.	.	.	.	.
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.												.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	E	R	G	I	V	V	E	K	T	G	P	Y	N	.	.	.	.	.	.	.	.	.	.	.	L	L	F	L	F	S	I	G	I	D	K	T	K	A	M	G	L	L	R	G	L	T	E	F	K	R	S
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	A	R	G	V	L	X	V	P	G	H	Y	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	X	R	X	N	Y	V	P	E	P	D	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Template Known Secondary structure					T	T						G	G	G	G		T	T	B	S	S			G	G	G	G	G						S		S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.