Job Description P52095 Confidence 99.70% Date Thu Jan 5 12:05:15 GMT 2012 Rank 98 Aligned Residues 287 % Identity 13% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																		.																					.	.	.																								.	.	.	.
Query SS confidence																		.																					.	.	.																								.	.	.	.
Query Sequence		P	H	L	E	A	E	E	Y	I	A	R	T	F	G	A	E	.	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	.	.	.	A	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	H	L	L	M	M	.	.	.	.	N	D	V	V	P	V	W	L	K	P	T	R	N
Query Conservation																		.																					.	.	.																								.	.	.	.
Alig confidence																		.																					.	.	.																								.	.	.	.
Template Conservation
Template Sequence		V	L	D	A	A	R	E	A	V	A	D	L	V	N	A	D	P	G	G	V	V	L	G	A	D	R	A	V	L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E
Template Known Secondary structure															T			G	G	G					S													T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T
Template Predicted Secondary structure
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																									.																					.	.
Query SS confidence																																									.																					.	.
Query Sequence		A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	.	T	Y	D	G	L	L	Y	N	T	D	W	I	K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q
Query Conservation																																									.																					.	.
Alig confidence						.	.	.	.	.	.	.	.	.																.	.	.	.	.							.																					.	.																	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																.	.	.	.	.																																														.	.
Template Sequence		T	G	E	L	.	.	.	.	.	.	.	.	.	P	T	W	Q	W	E	S	L	I	S	K	S	T	R	L	.	.	.	.	.	V	A	V	N	S	A	S	G	T	L	G	G	V	T	D	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	I	.	.
Template Known Secondary structure		T				.	.	.	.	.	.	.	.	.		G	G	G							T	T				.	.	.	.	.					S	B		T	T	T		B	B													T	T								T	T	T	T	T	T						.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																.	.	.	.	.																																														.	.
Template SS confidence
		142	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.								.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		G	K	S	G	M	S	G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	.	.	.	.	.	.	.	Y	D	E	E	A	F	N	E	A	F	M	M	H	T	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	.	.	.	.	.
Query Conservation																																									.	.	.	.	.	.	.																														.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																	.														.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	.	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	.	G	P	P	I	G	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.						S						G	G	G	G	T	.	S		S							S							T	S					S		T	T			G	G	G	G	G			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																	.
Template SS confidence
											206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
											413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P	V	A	P	G	E	Q	W	H	G	F	N	D	A	D	A	D	H
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L	R	S	L	P	L	V	M	L	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	S	T	T			S	S																													T		T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		484	.	.	.	.	.	490					.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.														.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	L	D	P	V	K	.	.	.	.	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K	A
Query Conservation									.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.					.	.	.	.							.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	.	.	.	.	.	.	.	.	.	.	.	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y	S	T	M	A	E	V
Template Known Secondary structure		.	.	.			S	S	B		S							T	.	.	.	.	.	.	.	.	.	.	.	T	B												T	T								S								T	T	T	T	T	T									T	T
Template Predicted Secondary structure		.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					322	.	.	.	.	.	.	.	330	.	.	.	.	.												.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		547	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	L	L	R	G	L	T	E	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	L	V	R	A	L	A	S	L
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions