Job Description P52095 Confidence 99.64% Date Thu Jan 5 12:05:15 GMT 2012 Rank 123 Aligned Residues 329 % Identity 15% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence		G	T	A	Y	Q	K	S	P	V	G	C	L	F	Y	D	F	F	G	G	N	T	L	K	A	D	V	S	I	S	V	T	E	L	G	S	L	L	D	H	T	G	P	H	L	E	A	E	E	Y	I	A	R	T	F	G	.	.	.	.	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y
Query Conservation																																																									.	.	.	.
Alig confidence																													.	.	.												.														.	.	.	.																		.
Template Conservation																													.	.	.												.																																			.
Template Sequence		S	I	G	D	T	T	Q	P	L	N	A	S	V	A	E	A	F	A	S	S	I	A	R	L	S	S	P	.	.	.	T	T	C	R	G	Y	G	P	D	F	G	.	L	P	A	L	R	Q	K	L	S	E	D	F	Y	R	G	F	V	D	A	K	E	I	F	I	S	D	G	A	K	V	D	L	F	R	.	L	L	S
Template Known Secondary structure		S	S																							T	S	S	.	.	.	S								T	T		.											T	T	S	T	T	S	S		G	G	G					S									.
Template Predicted Secondary structure																													.	.	.												.																																			.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		A	A	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	H	L	L	M	M	N	D	V	V	P	V	W	L	K	P	T	R	N	A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	.	T	Y	D
Query Conservation																																																																														.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	F	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	I	A	R	L	T	G	A	K	E	I	I	A	L	P	C	L	Q	E	N	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	E	F	P	E	D	T	H	I	D	I	L	C	L	C	S	P	N	N	P	T
Template Known Secondary structure					S	S								S												T	T		S									G	G	G	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T				S						S	S		T	T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		310	.	.	.				.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure						.	.	.														.	.																																													.
Query SS confidence						.	.	.														.	.																																													.
Query Sequence		G	L	L	Y	.	.	.	N	T	D	W	I	K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	.	A	L	S	Q	A	S	L	I	H	I	K	G	E
Query Conservation						.	.	.														.	.																																													.
Alig confidence						.	.	.														.	.									.	.	.																																		.
Template Conservation																																.	.	.
Template Sequence		G	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	.	.	.	T	F	I	S	D	P	S	L	P	K	S	I	F	E	I	P	D	A	R	F	C	A	I	E	I	N	S	F	S	K	P	L	G	F	A	G	I	R	L	G	W	T	V	I	P	Q	E
Template Known Secondary structure																				T	T								T	T	G	.	.	.	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T									G	G	G	T	T	T	T										T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
					384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	Y	D	E	E	A	F	N	E	A	F	M	M	H	T	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D
Query Conservation		.	.	.
Alig confidence		.	.	.																																																													.	.	.	.	.	.	.								.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.								.	.	.
Template Sequence		L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	I	L	P	Q	L	E	A	I	H	Y	Y	R	E	N	S	D	L	L	R	K	A	L	L	A	T	G	.	.	.	.	.	.	.	F	E	V	F	G	G	E	.	.	.
Template Known Secondary structure			B		T	T	S		B																															T	T	T																					T	T	.	.	.	.	.	.	.							S	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.								.	.	.	320	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.							.	.	.	530	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.
Query Sequence		E	A	E	C	W	P	V	A	P	G	E	Q	W	H	G	F	N	D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	.	.	.	.	.	.	K	T	G	P	Y	N	L	L
Query Conservation																																																																				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	R	D	.	.	.	.	.	.	.	.	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	G	R	S	G	S	G	F	V	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S									T	T			T	T	T	.	.	.	.	.	.	.	.										S						G	G	G	G		G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
																												324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.									.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	F	S	I	G	I	D	K	T	K	A	M	G	L	L	R	G	L	T
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		F	S	S	L	.	.	G	K	R	E	D	I	L	A	A	C	E	R	L	Q
Template Known Secondary structure						.	.	S
Template Predicted Secondary structure						.	.
Template SS confidence
		370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions