Job Description P52095 Confidence 99.70% Date Thu Jan 5 12:05:15 GMT 2012 Rank 100 Aligned Residues 214 % Identity 10% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		L	E	A	E	E	Y	I	A	R	T	F	G	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	A	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	H	L	.	.	.	.	L	M	M	N	D	V	V	P	V	W	L	K	P	T	R	N	A	L	G	I	L	G
Query Conservation																																																								.	.	.	.
Alig confidence																								.																																.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation																								.																																																		.	.	.	.	.	.	.	.
Template Sequence		E	Q	F	E	E	M	V	C	S	I	E	G	A	A	G	S	A	A	F	G	S	G	.	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	.	.	.	.	.	.	.	.
Template Known Secondary structure													T		S						S	S		.									T	T	T			T	T							S	S																T	T								T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																																																		.	.	.	.	.	.	.	.
Template SS confidence
		1562	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.		.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																			.																					.	.
Query SS confidence																																			.																					.	.
Query Sequence		G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	.	T	Y	D	G	L	L	Y	N	T	D	W	I	K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S
Query Conservation																																			.																					.	.
Alig confidence		.	.	.	.	.	.	.																.	.	.	.	.							.																					.	.																.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	D	V	E	K	V	K	A	A	W	K	P	N	T	K	M	.	.	.	.	.	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	P	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	S										T	T				.	.	.	.	.					S	S		T	T	T																	T								T	T	T		T	T	T			G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Template SS confidence
									1633	.	.	.	.	.	.	1640	.	.	.	.	.	.	.						.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	.	.	A	S	L	I	H	I	K	G	E	Y	D	E	E	A	F	N	E	A	F	M	M	H	T	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S
Query Conservation																										.	.
Alig confidence		.	.	.																						.	.																										.	.	.	.	.	.
Template Conservation		.	.	.																																																	.	.	.	.	.	.
Template Sequence		.	.	.	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	.	.	.	.	.	.	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	L	P	I	R	M	Q	I	H
Template Known Secondary structure		.	.	.	G	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S																		.	.	.	.	.	.														T	T
Template Predicted Secondary structure		.	.	.																																																	.	.	.	.	.	.
Template SS confidence
					1692	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.							1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H
Template Known Secondary structure														T		T	T
Template Predicted Secondary structure
Template SS confidence
		1763	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions