Job Description P52095 Confidence 99.34% Date Thu Jan 5 12:05:15 GMT 2012 Rank 203 Aligned Residues 318 % Identity 13% Template c3a8uX_ PDB info PDB header:transferase Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase Resolution 1.40 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.									.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																						.	.																								.	.	.	.	.	.	.	.																										.	.
Query SS confidence																						.	.																								.	.	.	.	.	.	.	.																										.	.
Query Sequence		S	L	L	D	H	T	G	P	H	L	E	A	E	E	Y	I	A	R	T	F	.	.	G	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	.	.	.	.	.	.	.	.	A	P	S	G	S	T	L	L	I	D	R	N	C	H	K	S	L	A	H	L	L	M	M	N	D	.	.
Query Conservation																						.	.																								.	.	.	.	.	.	.	.																										.	.
Alig confidence																						.	.																								.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		G	F	Q	Y	G	H	P	L	S	F	Q	L	A	E	K	I	T	D	L	T	P	G	N	L	N	H	V	F	F	T	D	S	G	S	E	C	A	L	T	A	V	K	M	V	R	A	Y	W	R	L	K	G	Q	A	T	K	T	K	M	I	G	R	A	R	G	Y	H	G	V	N	I	A	G	T	S	L	G	G	V	N
Template Known Secondary structure		S	S	S															T	T	S	S	T	T								S	S																			T	T		T	T								T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
											257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.					.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																											.	.											.	.							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																											.	.											.	.							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	V	V	P	V	W	L	K	P	T	R	N	A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	.	.	V	H	A	V	I	T	N	S	T	Y	.	.	D	G	L	L	Y	N	.	.	.	.	T	D	W	I	K
Query Conservation		.	.	.	.	.	.	.	.	.																																											.	.											.	.							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																											.	.											.	.							.	.	.	.
Template Conservation
Template Sequence		G	N	R	K	L	F	G	Q	P	M	Q	D	V	D	H	L	P	H	T	L	L	A	S	N	A	Y	S	R	G	M	P	K	E	G	G	I	A	L	A	D	E	L	L	K	L	I	E	L	H	D	A	S	N	I	A	A	V	F	V	E	P	L	A	G	S	A	G	V	L	V	P	P	E	G	Y	L	K	R	N	R
Template Known Secondary structure					T	T	T				S		S										G	G	G	T	T		S	S	S		S	S	S																	G	G	G								S	S	B	T	T	T	T		B				T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.							.	.	.	.	.	.	.	390	.
Predicted Secondary structure									.	.																																																									.	.	.	.	.	.
Query SS confidence									.	.																																																									.	.	.	.	.	.
Query Sequence		Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	.	.	.	.	.	.	E	Y	D	E	E	A	F	N	E
Query Conservation									.	.																																																									.	.	.	.	.	.
Alig confidence									.	.																	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.
Template Sequence		E	I	C	N	Q	H	N	I	L	L	V	F	D	E	V	I	T	G	F	G	R	T	G	S	M	.	.	.	.	.	.	F	G	A	D	S	F	G	V	T	P	D	L	M	C	I	A	K	Q	V	T	N	G	A	I	P	M	G	A	V	I	A	S	T	E	I	Y	Q	T	F	M	N	Q	P	T	P	E	Y	A	V
Template Known Secondary structure								T								T	T	T	T	T	T	T	T	S	S	S	.	.	.	.	.	.	S						T				S						G	G	G	G	T	T	S	S																	T		S	S		T	T	S
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.							.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	M	M	H	T	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P	V	A	P	G	E
Query Conservation
Alig confidence																												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	P	H	G	Y	T	Y	S	A	H	P	V	A	C	A	A	G	L	A	A	L	C	L	L	Q	.	.	.	K	E	N	L	V	Q	S	V	A	E	V	A	P	H	F	E	K	A	L	H	G	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S					T	T	T	T																	.	.	.		T	T																		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500							.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		Q	W	H	G	F	N	D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	.	.	.	.	.	.	Q	G	N	M	S	E	E	G	I	P	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	K	T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K
Query Conservation																															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.									.	.	.	.	.	.																										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																																								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	K	N	V	.	I	D	I	R	N	F	G	L	A	G	A	I	Q	I	A	P	R	D	G	D	A	I	V	R	P	F	E	A	G	M	A	L	W	K	A	G	F	Y	V	.	R	F	G	G	D	T	L	Q	F	G	P	T	F	N	S	K	P	Q	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	T	T		.							T	T									B	T	T	B	S	S														T				.				T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																																								.
Template SS confidence
																	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	G	L	L	R	G	L	T	E	F	K	R	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	R	L	F	D	A	V	G	E	V	L	N	K	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions