 |
Job Description | P52095 | Confidence | 21.86% | Date | Thu Jan 5 12:05:15 GMT 2012 |
Rank | 462 | Aligned Residues | 59 |
% Identity | 20% | Template | c2kcaA_ |
PDB info |
PDB header:virus | Chain: A: PDB Molecule:bacteriophage spp1 complete nucleotide sequence; |
PDBTitle: gp16
|
Resolution | UNK |
|
 |
  |   |
630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | E | V | E | T | I | A | L | E | Q | L | V | G | R | V | S | A | N | M | I | L | P | Y | P | P | G | V | P | L | L | M | P | G | E | M | L | T | K | E | S | R | T | V | L | D | F | L | L | M | L | C | S | V | G | Q | H | Y | P | G | F | E | T | D | I | H | G | A | K | Q | D | E | D | G | V | Y | R | V | R | V | L |
Query Conservation |   |
  |   |   |
|   |
|   |
|   |
|
|   |
|
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |
|   |   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|
|
|   |   |   |
|
|
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
S | Q | E | E | Y | Y | K | A | Q | Q | L | Q | T | P | I | G | Y | N | I | Y | T | P | Y | D | D | R | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | K | K | M | R | V | I | Y | R | G | K | I | V | T | F | I | G | D | P | V | D | L | S | G | L | Q | E | I | T | R | I |
Template Known Secondary structure |   |
T | T | T | S | S |
| T | T |
|
|
|
|
|
|
|  |  |  |  |  |  |  | S |
|
|
| S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S | S | S |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
  |
  |   |
710 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
K |
Query Conservation |   |
|
Alig confidence |   |
|
Template Conservation |   |
  |
Template Sequence |   |
K |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
134 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|