Job Description P52095 Confidence 99.94% Date Thu Jan 5 12:05:15 GMT 2012 Rank 21 Aligned Residues 317 % Identity 14% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		P	H	L	E	A	E	E	Y	I	A	R	T	F	G	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	A	P	S	G	S	T	L	L	I	.	.	.	D	R	N	C	H	K	S	L	A	H	L	L	M	M	N	D	V	V	P	V	W	L	K	P	T	R	N	A	L	G	I	L
Query Conservation																																															.	.	.
Alig confidence																																															.	.	.
Template Conservation
Template Sequence		V	E	S	L	A	I	E	R	A	K	A	L	F	G	A	A	W	A	N	V	Q	P	H	S	G	S	Q	A	N	M	A	V	Y	M	A	L	M	E	P	G	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L
Template Known Secondary structure															T		S							S	S															T	T								G	G	G	T			G	G	G	T		T	T	S						S									T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		G	G	I	P	R	R	E	F	T	R	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	T	Y	D	G	L	L	Y	N	T	D	W	I	K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S
Query Conservation																																																								.	.
Alig confidence		.	.	.	.	.	.	.																	.	.	.	.	.																											.	.																				.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																	.	.	.	.	.																																																.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	I	D	L	E	E	V	R	R	L	A	L	E	H	R	P	K	.	.	.	.	.	V	I	V	A	G	A	S	A	Y	P	R	F	W	D	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.																S	.	.	.	.	.							S	S			S															T								T	T	T						T	T	S	S			.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																	.	.	.	.	.																																																.	.	.	.	.
Template SS confidence
									150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	Y	D	E	E	A	F	N	E	A	F	M	M	H	T	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E
Query Conservation
Alig confidence		.	.	.																					.
Template Conservation		.	.	.																					.
Template Sequence		.	.	.	P	L	P	Y	A	H	V	V	T	S	T	T	H	K	T	L	R	G	P	R	.	G	G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	G	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	V	E
Template Known Secondary structure		.	.	.		T	T	T		S						S	S	G	G	G				S	.							S													T	T	T	T		S	S																	T	S
Template Predicted Secondary structure		.	.	.																					.
Template SS confidence
					213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W	P	V	A	P	G	E	Q	W	H	G	F	N	D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P
Query Conservation
Alig confidence														.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation														.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		N	A	K	R	L	A	E	E	L	A	R	R	.	G	Y	R	I	V	T	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	H	L	F	L	V	D	L	.	.	.	.	.	.	.	.	.	R	P	K	G	L	T
Template Known Secondary structure												T	T	.	T				G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S							.	.	.	.	.	.	.	.	.	G	G	G	T
Template Predicted Secondary structure														.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.																																			310	.	.	.	.	.	.	.	.										.	320	.	.	.	.
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.											530	.	.	.	.	.					.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.							.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.							.	.	.	.
Query Sequence		A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	K	T	G	.	.	.	.	.	.	.	.	.	.	P	Y	N	L	L	F	.	.	.	.	L	F	S	I	G	I	D	K	T	K	A	M	G	L	L	R	G	L	T	E	F	K	R	S	Y	D	L	N	L	R	I	K	N	M	L	P	D	L	Y	A	E
Query Conservation																					.	.	.	.	.	.	.	.	.	.							.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.							.	.	.	.																												.
Template Conservation																																																																				.
Template Sequence		G	K	E	A	E	E	R	L	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R	A	L	L	E	G	P	S	.	E	A	L	R	E	E	V	R	R	L	A	L	A
Template Known Secondary structure											T	T	T									T	T			S		T	T	T		S												T	T			G	G	G																		.													T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.
		577	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		404	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions