Job Description P52095 Confidence 99.15% Date Thu Jan 5 12:05:15 GMT 2012 Rank 220 Aligned Residues 323 % Identity 11% Template c2cjdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase; PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form Resolution 2.00 Å

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		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.														.	.	.	.	.	.	.	.	240	.	.	.	.		.	.
Predicted Secondary structure																											.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																											.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		V	T	E	L	G	S	L	L	D	H	T	G	P	H	L	E	A	E	E	Y	I	A	R	T	F	.	.	.	G	A	E	Q	S	Y	I	V	T	N	G	T	S	T	S	N	K	I	V	G	M	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	S	G	S	T	L	L	I	D	R	N	C	.	H	K
Query Conservation																											.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence																											.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		L	N	K	P	S	N	S	D	V	Y	S	V	A	M	A	R	F	V	E	T	F	A	R	V	L	G	D	P	A	L	P	H	L	F	F	V	E	G	G	A	L	A	V	E	N	A	L	K	A	A	F	D	W	K	S	R	H	N	Q	A	H	G	I	D	P	A	L	G	T	Q	V	L	H	L	R	G	A	F	H	G
Template Known Secondary structure		T					T	T	T																				T	T								S	S																							T	T	S		T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.												.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.
Predicted Secondary structure																	.	.																						.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence																	.	.																						.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		S	L	A	H	L	L	M	M	N	D	V	V	P	V	W	.	.	L	K	P	T	R	N	A	L	G	I	L	G	G	I	P	R	R	E	F	T	R	.	.	.	.	.	.	.	.	.	.	.	D	S	I	E	E	K	V	A	A	T	T	Q	A	Q	W	P	V	H	A	V	I	T	N	S	T	Y	.	.	D	G	L
Query Conservation																	.	.																						.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence																	.	.																						.	.	.	.	.	.	.	.	.	.	.																.	.	.									.	.
Template Conservation																																																																		.	.	.
Template Sequence		R	S	G	Y	T	L	S	L	T	N	T	K	P	T	I	T	A	R	F	P	K	F	D	W	P	R	I	D	A	P	Y	M	R	P	G	L	D	E	P	A	M	A	A	L	E	A	E	A	L	R	Q	A	R	A	A	F	E	T	R	P	H	D	I	A	.	.	.	C	F	V	A	E	P	I	Q	G	E	G	G	D
Template Known Secondary structure		S	S	T	T	G	G	G	T			S						T	T	S															T	T																								S	T	T	T			.	.	.						S			S	T	T	T
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.
		312	.	.					.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure					.	.	.	.													.	.
Query SS confidence					.	.	.	.													.	.
Query Sequence		L	Y	N	.	.	.	.	T	D	W	I	K	Q	T	L	D	V	P	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	H	F	H	P	I	Y	Q	G	K	S	G	M	S	G	E	R	V	A	G	K	V	I	F	E	T	Q	S	T	H	K	M	L	A	A	L	S	Q	A	S	L	I	H	I	K	G	E	Y	D
Query Conservation					.	.	.	.													.	.
Alig confidence					.	.	.	.													.	.																	.	.	.	.	.	.																	.	.						.
Template Conservation																																							.	.	.	.	.	.																	.	.						.
Template Sequence		R	H	F	R	P	E	F	F	A	A	M	R	E	L	C	D	E	F	D	A	L	L	I	F	D	E	V	Q	T	G	C	G	L	T	G	T	A	.	.	.	.	.	.	W	A	Y	Q	Q	L	D	V	A	P	D	I	V	A	F	G	.	.	K	K	T	Q	V	.	C	G	V	M	A	G	R	R	V	D	E	V	A
Template Known Secondary structure																			T	T								T	T	T	T	T	T	T	T	S	S	S	.	.	.	.	.	.	S	T					T				S						.	.	G	G	G	S	S	.							G	G	G	G	G	S	T
Template Predicted Secondary structure																																							.	.	.	.	.	.																	.	.						.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.							.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	A	F	N	E	A	F	M	M	H	T	T	T	S	P	S	Y	P	I	V	A	S	V	E	T	A	A	A	M	L	R	G	N	P	G	K	R	L	I	N	R	S	V	E	R	A	L	H	F	R	K	E	V	Q	R	L	R	E	E	S	D	G	W	F	F	D	I	W	Q	P	P	Q	V	D	E	A	E	C	W
Query Conservation
Alig confidence																																		.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	V	F	A	V	P	S	R	L	N	S	T	W	G	G	N	L	T	D	M	V	R	A	R	R	I	L	E	V	I	E	.	.	.	A	E	G	L	F	E	R	A	V	Q	H	G	K	Y	L	R	A	R	L	D	E	L	A	A	D	F	P	A	V	V	L	D	P	R	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T		T	T	T	S	T	T	S	S			S	S	S	S																	.	.	.			T																							S	T	T	T	S						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	A	P	G	E	Q	W	H	G	F	N	D	A	D	A	D	H	M	F	L	D	P	V	K	V	T	I	L	T	P	G	M	D	E	Q	G	N	M	S	E	E	G	I	P	A	A	L	V	A	K	F	L	D	E	R	G	I	V	V	E	K	T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	L	M	C	A	F	S	L	P	T	.	.	.	.	.	.	.	.	.	.	T	A	D	R	D	E	L	I	R	Q	L	W	Q	R	A	V	I	V	L	P	A	G	A	D	T	V	R	F	R	P	P	L	T	V	S	T	A	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T							S	S	.	.	.	.	.	.	.	.	.	.														T	T							T	T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							385	.	.	.	.	390	.	.	.	.	.											.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	G	L	L	R	G	L	T	E	F	K	R	S	Y	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	A	A	I	A	A	V	R	S	A	L	P	V	V	T	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions