Job Description P77473 Confidence 99.09% Date Thu Jan 5 12:29:36 GMT 2012 Rank 22 Aligned Residues 150 % Identity 8% Template c3qyyB_ PDB info PDB header:signaling protein/inhibitor Chain: B: PDB Molecule:response regulator; PDBTitle: a novel interaction mode between a microbial ggdef domain and the bis-2 (3, 5 )-cyclic di-gmp Resolution 1.90 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		A	Y	I	D	N	N	V	P	Q	C	S	S	L	E	H	E	S	P	P	D	T	F	P	E	P	G	K	I	S	.	.	.	.	K	D	G	Y	R	V	W	L	T	S	H	N	D	L	G	I	I	R	Y	M	V	A	M	G	T	A	H	Y	V	V	M	I	D	P	A	S	F	I	D	V	I	P	Y	S	S	W	Q
Query Conservation																															.	.	.	.
Alig confidence																															.	.	.	.
Template Conservation
Template Sequence		L	K	R	H	A	L	F	D	P	L	T	E	A	L	N	R	R	G	C	E	Q	A	M	R	D	S	V	T	A	A	Q	R	E	G	W	P	F	V	L	F	V	L	D	M	D	N	L	K	P	I	N	D	R	F	G	H	L	A	G	D	R	V	L	V	R	L	V	E	S	A	Y	G	W	L	G	A	Q	D	W	I
Template Known Secondary structure								B		T	T	T		S	B																			T												S	S																										T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	A	A	I	I	G	N	A	H	N	V	V	I	T	S	S	D	E	I	A	Q	G	I	I	T	R	L	Q	K	T	P	G	E	H	I	E	N	N	G	I	I	Y	D	I	L	P	L	P	E	M	N	I	S	I	I	T	W	A	S	T	K	M	L	Q	K	G	W	H	R	Q	V	F	I	W	L	P	L	G	L
Query Conservation
Alig confidence												.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation												.																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	W	G	G	D	E	F	L	I	.	G	V	H	A	S	E	D	E	A	T	L	K	L	N	Q	W	L	S	M	L	E	E	A	P	L	H	V	S	A	G	S	A	.	.	.	.	.	.	.	.	.	.	V	C	E	V	G	I	D	A	T	E	L	Y	R	R	A	D	A	A	M	Y	R	A	K	F	S	G	G
Template Known Secondary structure						T	T					.				S																													.	.	.	.	.	.	.	.	.	.				T	T																				T	T	S
Template Predicted Secondary structure												.																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.											.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		252	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	L	V	R
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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