Job Description P77473 Confidence 100.00% Date Thu Jan 5 12:29:36 GMT 2012 Rank 1 Aligned Residues 410 % Identity 16% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		R	V	S	Y	S	Y	R	Y	I	Q	E	V	A	Y	I	D	N	N	V	P	Q	C	S	S	L	E	H	E	S	P	P	D	T	F	P	E	P	G	K	.	.	.	I	S	K	D	G	Y	R	V	W	L	T	S	H	N	D	L	G	I	I	R	Y	M	V	A	M	G	T	A	H	Y	V	V	M	I	D	P	A	S
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.
Template Conservation
Template Sequence		A	L	F	Q	E	Q	A	E	R	S	E	K	L	R	T	E	S	Y	Q	D	N	L	T	G	L	A	N	R	R	Y	F	E	M	Q	L	N	A	R	V	S	N	P	E	Q	A	S	S	G	Y	L	L	L	L	R	V	K	D	L	A	G	L	N	Q	R	L	G	G	Q	R	T	D	E	L	L	K	A	V	G	E	Q
Template Known Secondary structure								T	T											B		T	T	T	S	S														T	T		T	T	T												S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		F	I	D	V	I	P	Y	.	.	.	S	S	W	Q	I	D	A	A	I	I	G	N	A	H	N	V	V	I	T	S	S	D	E	I	A	Q	G	I	I	T	R	L	Q	K	T	P	G	E	H	I	E	N	N	G	I	I	Y	D	I	L	P	L	P	E	M	N	I	S	I	I	T	W	A	S	T	K	M	L	Q	K
Query Conservation									.	.	.
Alig confidence									.	.	.																																																												.
Template Conservation																																																																							.
Template Sequence		L	S	R	E	C	A	K	Y	P	E	T	Q	N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	Q	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A	.	H	G	D	S	P	Q	A	V	L	S
Template Known Secondary structure							S	S		S	T	T	T	T							T	T								T																		T						T	S		S		T	T											.	T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		G	W	H	R	Q	V	F	I	W	L	P	L	G	L	V	I	G	L	L	A	A	M	F	V	L	R	I	L	R	R	I	Q	S	P	H	H	R	L	Q	D	A	I	E	N	R	D	I	C	V	H	Y	Q	P	I	V	S	L	A	N	G	K	.	I	V	G	A	E	A	L	A	R	W	P	Q	T	D	G	S	W	L
Query Conservation																																																															.
Alig confidence																									.	.	.	.	.	.																																	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		L	G	D	Q	A	L	A	Q	A	E	G	Q	G	E	Q	N	W	A	C	L	D	G	D	.	.	.	.	.	.	D	H	H	A	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T	Q	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I
Template Known Secondary structure												S		S	S		S								.	.	.	.	.	.	S														T	T												S	S		T	T														T	T	S
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.							.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	D	S	F	I	P	L	A	Q	Q	T	G	L	S	E	P	L	T	L	L	I	I	R	S	V	F	E	D	M	G	D	W	L	R	Q	H	P	Q	Q	H	I	S	I	N	L	E	S	P	V	L	T	S	E	K	I	P	Q	L	L	R	D	M	I	N	H	Y	Q	V	N	P	R	Q	I	A	L	E	L	T	E
Query Conservation
Alig confidence																																		.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	A	G	.	.	.	.	.	H	E	E	S	L	A	L	N	L	S	S	A	T	L	A	D	P	Q	A	L	N	K	V	F	E	I	L	R	A	H	S	N	L	G	A	R	L	T	L	E	I	G	E
Template Known Secondary structure												T	T	T																	G	G	G	.	.	.	.	.																S	S													T	G	G	G	T	T	T							G
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.						.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.					.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		R	E	F	A	D	P	K	T	S	A	P	I	I	S	R	Y	R	E	A	G	H	E	I	Y	L	D	D	F	G	T	G	Y	S	S	L	S	Y	L	Q	D	L	D	V	D	I	L	K	I	D	K	S	F	V	D	A	L	E	Y	K	N	.	.	.	.	V	T	P	H	I	I	E	M	A	K	T	L	K	L	K	M
Query Conservation																																																														.	.	.	.
Alig confidence																																																														.	.	.	.
Template Conservation
Template Sequence		E	Q	L	P	E	Q	A	V	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L
Template Known Secondary structure		G	G																	T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	E	G	I	E	T	S	K	Q	E	E	W	L	R	Q	H	G	V	H	Y	G	Q	G	W	L	Y	S	K	A	L	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	E	R	V	E	T	E	G	E	L	S	V	I	R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	K	P	W
Template Known Secondary structure								S									T	T	T		S				S	G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.