Job Description P77473 Confidence 100.00% Date Thu Jan 5 12:29:36 GMT 2012 Rank 6 Aligned Residues 235 % Identity 21% Template c3pfmA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf Resolution 2.91 Å

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		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		R	R	I	Q	S	P	H	H	R	L	Q	D	A	I	E	N	R	D	I	C	V	H	Y	Q	P	I	V	S	L	A	N	G	K	.	I	V	G	A	E	A	L	A	R	W	P	Q	T	D	G	S	W	L	S	P	D	S	F	I	P	L	A	Q	Q	T	G	L	S	E	P	L	T	L	L	I	I	R	S	V	F	E
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		A	D	H	H	A	W	H	R	L	L	D	R	A	L	S	E	Q	H	F	Q	L	Y	F	Q	P	V	V	A	A	R	D	T	H	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I	P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	S	R	L	D	L	L	X	L	E	Q	V	L	R
Template Known Secondary structure																		T												S	S		T	T	S													T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	G	D	W	L	R	Q	H	P	Q	Q	H	I	S	I	N	L	E	S	P	V	L	T	S	E	K	I	P	Q	L	L	R	D	M	I	N	H	Y	Q	V	N	P	R	Q	I	A	L	E	L	T	E	R	E	F	A	D	P	K	T	S	A	P	I	I	S	R	Y	R	E	A	G	H	E	I	Y	L	D	D	F
Query Conservation
Alig confidence						.	.	.	.	.
Template Conservation						.	.	.	.	.
Template Sequence		Q	X	A	S	.	.	.	.	.	H	E	D	C	L	A	L	N	L	S	A	A	T	L	A	D	P	H	A	L	N	R	V	F	E	I	L	R	Q	H	S	D	L	G	P	R	L	T	L	E	I	G	E	E	Q	L	P	E	Q	A	X	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F
Template Known Secondary structure			G	G	G	.	.	.	.	.																														T	G	G	G	T	T	T							S	S	S																		T
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		488	.	490	.						.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.					.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		G	T	G	Y	S	S	L	S	Y	L	Q	D	L	D	V	D	I	L	K	I	D	K	S	F	V	D	A	L	E	Y	K	N	.	.	.	.	V	T	P	H	I	I	E	M	A	K	T	L	K	L	K	M	V	A	E	G	I	E	T	S	K	Q	E	E	W	L	R	Q	H	G	V	H	Y	G	Q	G	W	L	Y	S
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		G	G	R	F	S	X	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	D	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R	V	E	T	E	G	E	L	Q	V	I	R	E	X	G	L	Y	G	V	Q	G	Q	L	F	G
Template Known Secondary structure		T	T	T	G	G	G	G	G	G					T		S						G	G	G	G	T	T	T	T	T		T																T	T										S											T		S				S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
		501	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	A	P	W
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		643	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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