Phyre 2 alignment of P77473 with c3ktsA

Job Description P77473
Confidence 60.51% Date Thu Jan 5 12:29:36 GMT 2012

Rank 241 Aligned Residues 58

% Identity 21% Template c3ktsA_

PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365

Resolution 2.75 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence	S	S	L	S	Y	L	Q	D	L	D	V	D	I	L	K	I	D	K	S	F	V	D	A	L	E	Y	K	N	V	T	P	H	I	I	E	M	A	K	T	L	K	L	K	M	V	A	E	G	.	I	E	T	S	K	Q	E	E	W	L	R	Q	H	G	V	H	Y	G
Query Conservation																																																	.
Alig confidence																							.	.	.	.	.	.	.	.																			.
Template Conservation																							.	.	.	.	.	.	.	.
Template Sequence	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E	L	L	P	G	I	I	P	.	.	.	.	.	.	.	.	E	Q	V	Q	K	M	T	Q	K	L	H	I	P	V	I	A	G	G	L	I	E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V
Template Known Secondary structure												S							T	T			.	.	.	.	.	.	.	.																		S	S			S									T	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.
Template SS confidence
	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.									.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

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Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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