Job Description P77473 Confidence 20.76% Date Thu Jan 5 12:29:36 GMT 2012 Rank 390 Aligned Residues 100 % Identity 24% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

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		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		L	T	E	R	E	F	A	D	P	K	T	S	A	P	I	I	S	R	Y	R	E	A	G	H	.	E	I	Y	L	D	D	F	G	T	G	Y	S	S	L	S	Y	L	Q	D	L	D	V	D	I	L	K	I	D	K	S	F	V	D	A	L	E	Y	K	N	V	T	P	H	I	I	E	M	A	K	T	L	K	L	K	M
Query Conservation																										.
Alig confidence																										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		F	T	A	D	G	Q	L	D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	.	R	V	P	V
Template Known Secondary structure		B		T	T	S	S	B															T	T		S					S	S	T	T	T	T	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T	.	S	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.																			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.
		473	.	.	.	.	.	.	480							.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.													.	.
Query SS confidence										.	.	.	.	.	.													.	.
Query Sequence		V	A	E	G	I	E	T	S	.	.	.	.	.	.	K	Q	E	E	W	L	R	Q	H	G	V	H	.	.	Y	G	Q	G	W	L	Y	S	K	A	L	P	K	E	D	F	L	R	W	A	E	Q
Query Conservation										.	.	.	.	.	.													.	.
Alig confidence				.						.	.	.	.	.	.													.	.											.
Template Conservation				.																																				.
Template Sequence		L	I	.	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G	I	V	V	I	N	P	Y	Y	W	K	V	.	S	E	A	N	L	I	R	Y	F	E	Q
Template Known Secondary structure				.				S	S																T		S								S	S	S			.
Template Predicted Secondary structure				.																																				.
Template SS confidence
		86	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions